Hb_003406_020

Information

Type -
Description -
Location Contig3406: 18190-19787
Sequence    

Annotation

kegg
ID pvu:PHAVU_001G091900g
description hypothetical protein
nr
ID XP_012066591.1
description PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KY86
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08090 PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon gag protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 015_O04r.ab1: 15573-33071

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003406_020 0.0 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
2 Hb_020250_020 0.1146753855 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
3 Hb_094917_010 0.1674245275 - - -
4 Hb_001570_010 0.175376641 - - -
5 Hb_004274_010 0.2063392397 - - PREDICTED: uncharacterized protein LOC104451199 [Eucalyptus grandis]
6 Hb_001452_150 0.2075717127 - - PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]
7 Hb_003427_040 0.2091593305 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
8 Hb_009826_010 0.2096809704 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_011476_010 0.2203401078 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
10 Hb_000029_220 0.2256097335 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Jatropha curcas]
11 Hb_024248_010 0.2288675009 - - PREDICTED: uncharacterized protein LOC105779006 [Gossypium raimondii]
12 Hb_003186_050 0.2326823582 - - -
13 Hb_000914_010 0.2334651069 - - hypothetical protein POPTR_0025s00760g [Populus trichocarpa]
14 Hb_167457_010 0.2359921975 - - hypothetical protein glysoja_045622, partial [Glycine soja]
15 Hb_051410_010 0.2380786876 - - PREDICTED: uncharacterized protein LOC103401813 [Malus domestica]
16 Hb_094484_010 0.2436758601 - - kinase, putative [Ricinus communis]
17 Hb_001401_030 0.2486570109 - - PREDICTED: uncharacterized protein LOC105649622 [Jatropha curcas]
18 Hb_005676_020 0.2524787314 transcription factor TF Family: ERF hypothetical protein RCOM_1314900 [Ricinus communis]
19 Hb_000907_050 0.2566029474 - - -
20 Hb_027969_010 0.2568670195 - - hypothetical protein JCGZ_24556 [Jatropha curcas]

Gene co-expression network

sample Hb_003406_020 Hb_003406_020 Hb_020250_020 Hb_020250_020 Hb_003406_020--Hb_020250_020 Hb_094917_010 Hb_094917_010 Hb_003406_020--Hb_094917_010 Hb_001570_010 Hb_001570_010 Hb_003406_020--Hb_001570_010 Hb_004274_010 Hb_004274_010 Hb_003406_020--Hb_004274_010 Hb_001452_150 Hb_001452_150 Hb_003406_020--Hb_001452_150 Hb_003427_040 Hb_003427_040 Hb_003406_020--Hb_003427_040 Hb_185839_010 Hb_185839_010 Hb_020250_020--Hb_185839_010 Hb_068031_010 Hb_068031_010 Hb_020250_020--Hb_068031_010 Hb_020250_020--Hb_001570_010 Hb_020250_020--Hb_094917_010 Hb_165100_010 Hb_165100_010 Hb_020250_020--Hb_165100_010 Hb_094917_010--Hb_001570_010 Hb_002447_100 Hb_002447_100 Hb_094917_010--Hb_002447_100 Hb_155423_010 Hb_155423_010 Hb_094917_010--Hb_155423_010 Hb_007590_030 Hb_007590_030 Hb_094917_010--Hb_007590_030 Hb_151870_010 Hb_151870_010 Hb_094917_010--Hb_151870_010 Hb_001570_010--Hb_002447_100 Hb_001570_010--Hb_155423_010 Hb_000567_270 Hb_000567_270 Hb_001570_010--Hb_000567_270 Hb_034197_020 Hb_034197_020 Hb_001570_010--Hb_034197_020 Hb_004274_010--Hb_001452_150 Hb_004274_010--Hb_003427_040 Hb_009826_010 Hb_009826_010 Hb_004274_010--Hb_009826_010 Hb_011476_010 Hb_011476_010 Hb_004274_010--Hb_011476_010 Hb_000029_220 Hb_000029_220 Hb_004274_010--Hb_000029_220 Hb_024248_010 Hb_024248_010 Hb_004274_010--Hb_024248_010 Hb_001452_150--Hb_003427_040 Hb_001452_150--Hb_009826_010 Hb_001452_150--Hb_024248_010 Hb_001452_150--Hb_000029_220 Hb_001452_150--Hb_011476_010 Hb_003427_040--Hb_009826_010 Hb_003427_040--Hb_024248_010 Hb_003427_040--Hb_000029_220 Hb_003427_040--Hb_011476_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0572039 0.0307787 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.048294 0.236601

CAGE analysis