Hb_001570_010

Information

Type -
Description -
Location Contig1570: 7909-9190
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13693: 8129-8457
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001570_010 0.0 - - -
2 Hb_094917_010 0.061947201 - - -
3 Hb_003406_020 0.175376641 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
4 Hb_002447_100 0.1882223099 - - hypothetical protein POPTR_0009s06260g [Populus trichocarpa]
5 Hb_155423_010 0.1982309124 - - -
6 Hb_000567_270 0.2122023143 - - hypothetical protein L484_017162 [Morus notabilis]
7 Hb_034197_020 0.2138213734 - - hypothetical protein VITISV_041099 [Vitis vinifera]
8 Hb_005920_030 0.2169440993 - - putative polyprotein [Oryza sativa Japonica Group]
9 Hb_020250_020 0.2171498265 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
10 Hb_002631_270 0.2206425116 transcription factor TF Family: MYB hypothetical protein POPTR_0005s09930g [Populus trichocarpa]
11 Hb_000644_020 0.2207730551 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
12 Hb_000803_230 0.2260518171 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
13 Hb_151870_010 0.2274888393 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
14 Hb_009851_090 0.2325235054 - - Protein ABIL2, putative [Ricinus communis]
15 Hb_000432_070 0.2329049459 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
16 Hb_000473_160 0.2335866557 - - PREDICTED: uncharacterized protein LOC102596609 [Solanum tuberosum]
17 Hb_006807_010 0.2337273625 - - hypothetical protein JCGZ_20881 [Jatropha curcas]
18 Hb_003994_070 0.2349409808 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
19 Hb_007590_030 0.2357959409 - - PREDICTED: iridoid synthase [Jatropha curcas]
20 Hb_003311_020 0.2360210064 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001570_010 Hb_001570_010 Hb_094917_010 Hb_094917_010 Hb_001570_010--Hb_094917_010 Hb_003406_020 Hb_003406_020 Hb_001570_010--Hb_003406_020 Hb_002447_100 Hb_002447_100 Hb_001570_010--Hb_002447_100 Hb_155423_010 Hb_155423_010 Hb_001570_010--Hb_155423_010 Hb_000567_270 Hb_000567_270 Hb_001570_010--Hb_000567_270 Hb_034197_020 Hb_034197_020 Hb_001570_010--Hb_034197_020 Hb_094917_010--Hb_003406_020 Hb_094917_010--Hb_002447_100 Hb_094917_010--Hb_155423_010 Hb_007590_030 Hb_007590_030 Hb_094917_010--Hb_007590_030 Hb_151870_010 Hb_151870_010 Hb_094917_010--Hb_151870_010 Hb_020250_020 Hb_020250_020 Hb_003406_020--Hb_020250_020 Hb_004274_010 Hb_004274_010 Hb_003406_020--Hb_004274_010 Hb_001452_150 Hb_001452_150 Hb_003406_020--Hb_001452_150 Hb_003427_040 Hb_003427_040 Hb_003406_020--Hb_003427_040 Hb_002447_100--Hb_155423_010 Hb_002447_100--Hb_007590_030 Hb_112791_030 Hb_112791_030 Hb_002447_100--Hb_112791_030 Hb_001542_010 Hb_001542_010 Hb_002447_100--Hb_001542_010 Hb_145080_010 Hb_145080_010 Hb_002447_100--Hb_145080_010 Hb_011358_010 Hb_011358_010 Hb_002447_100--Hb_011358_010 Hb_002631_270 Hb_002631_270 Hb_155423_010--Hb_002631_270 Hb_003994_070 Hb_003994_070 Hb_155423_010--Hb_003994_070 Hb_009851_090 Hb_009851_090 Hb_155423_010--Hb_009851_090 Hb_155423_010--Hb_151870_010 Hb_155423_010--Hb_000567_270 Hb_003311_020 Hb_003311_020 Hb_000567_270--Hb_003311_020 Hb_032016_010 Hb_032016_010 Hb_000567_270--Hb_032016_010 Hb_007533_050 Hb_007533_050 Hb_000567_270--Hb_007533_050 Hb_000644_020 Hb_000644_020 Hb_000567_270--Hb_000644_020 Hb_000567_270--Hb_009851_090 Hb_006455_020 Hb_006455_020 Hb_000567_270--Hb_006455_020 Hb_002482_050 Hb_002482_050 Hb_034197_020--Hb_002482_050 Hb_003375_050 Hb_003375_050 Hb_034197_020--Hb_003375_050 Hb_000803_230 Hb_000803_230 Hb_034197_020--Hb_000803_230 Hb_005920_030 Hb_005920_030 Hb_034197_020--Hb_005920_030 Hb_034197_020--Hb_000567_270 Hb_034197_020--Hb_003311_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0360724 0 0.0820201 0.0428311 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.127228 0.451749

CAGE analysis