Hb_019762_040

Information

Type -
Description -
Location Contig19762: 32151-40031
Sequence    

Annotation

kegg
ID rcu:RCOM_1031430
description hypothetical protein
nr
ID XP_002513771.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RJ52
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1031430 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19875: 32548-33452
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019762_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_124055_010 0.2096702365 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
3 Hb_000635_140 0.2119662649 transcription factor TF Family: NF-YC DNA binding protein, putative [Ricinus communis]
4 Hb_000561_020 0.2194234346 - - hypothetical protein JCGZ_19196 [Jatropha curcas]
5 Hb_003943_130 0.2242198881 - - PREDICTED: uncharacterized protein LOC105636341 [Jatropha curcas]
6 Hb_000268_010 0.2245811712 - - conserved hypothetical protein [Ricinus communis]
7 Hb_014783_010 0.2249913439 - - cold-inducible RNA binding protein, putative [Ricinus communis]
8 Hb_000196_050 0.2274179901 - - hypothetical protein JCGZ_20265 [Jatropha curcas]
9 Hb_000500_060 0.2310877719 - - BnaC08g21190D [Brassica napus]
10 Hb_000010_210 0.2341680068 - - PREDICTED: centromere protein X [Jatropha curcas]
11 Hb_015807_140 0.235382384 - - small heat-shock protein, putative [Ricinus communis]
12 Hb_000914_090 0.2388002589 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
13 Hb_000442_090 0.239300373 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Jatropha curcas]
14 Hb_000347_340 0.2402772257 - - ring finger, putative [Ricinus communis]
15 Hb_000220_130 0.240514359 - - Phosphatidyl serine synthase family protein isoform 1 [Theobroma cacao]
16 Hb_009659_010 0.2422711829 - - PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Vitis vinifera]
17 Hb_000101_270 0.2438490104 - - pleckstrin homology domain-containing family protein [Populus trichocarpa]
18 Hb_000295_120 0.2445611826 - - -
19 Hb_002506_060 0.2446556641 - - PREDICTED: probable transporter mch1 [Populus euphratica]
20 Hb_000975_250 0.2460479244 - - PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_019762_040 Hb_019762_040 Hb_124055_010 Hb_124055_010 Hb_019762_040--Hb_124055_010 Hb_000635_140 Hb_000635_140 Hb_019762_040--Hb_000635_140 Hb_000561_020 Hb_000561_020 Hb_019762_040--Hb_000561_020 Hb_003943_130 Hb_003943_130 Hb_019762_040--Hb_003943_130 Hb_000268_010 Hb_000268_010 Hb_019762_040--Hb_000268_010 Hb_014783_010 Hb_014783_010 Hb_019762_040--Hb_014783_010 Hb_097007_010 Hb_097007_010 Hb_124055_010--Hb_097007_010 Hb_004125_110 Hb_004125_110 Hb_124055_010--Hb_004125_110 Hb_000272_050 Hb_000272_050 Hb_124055_010--Hb_000272_050 Hb_021924_010 Hb_021924_010 Hb_124055_010--Hb_021924_010 Hb_001488_400 Hb_001488_400 Hb_124055_010--Hb_001488_400 Hb_000236_460 Hb_000236_460 Hb_124055_010--Hb_000236_460 Hb_010897_030 Hb_010897_030 Hb_000635_140--Hb_010897_030 Hb_013839_010 Hb_013839_010 Hb_000635_140--Hb_013839_010 Hb_023536_010 Hb_023536_010 Hb_000635_140--Hb_023536_010 Hb_009493_010 Hb_009493_010 Hb_000635_140--Hb_009493_010 Hb_023732_060 Hb_023732_060 Hb_000635_140--Hb_023732_060 Hb_004994_260 Hb_004994_260 Hb_000635_140--Hb_004994_260 Hb_000196_050 Hb_000196_050 Hb_000561_020--Hb_000196_050 Hb_000561_020--Hb_003943_130 Hb_000500_060 Hb_000500_060 Hb_000561_020--Hb_000500_060 Hb_031042_010 Hb_031042_010 Hb_000561_020--Hb_031042_010 Hb_009554_010 Hb_009554_010 Hb_000561_020--Hb_009554_010 Hb_003683_040 Hb_003683_040 Hb_000561_020--Hb_003683_040 Hb_001369_640 Hb_001369_640 Hb_003943_130--Hb_001369_640 Hb_002289_120 Hb_002289_120 Hb_003943_130--Hb_002289_120 Hb_000152_420 Hb_000152_420 Hb_003943_130--Hb_000152_420 Hb_002316_060 Hb_002316_060 Hb_003943_130--Hb_002316_060 Hb_001538_090 Hb_001538_090 Hb_003943_130--Hb_001538_090 Hb_006909_030 Hb_006909_030 Hb_003943_130--Hb_006909_030 Hb_000268_010--Hb_014783_010 Hb_000268_010--Hb_003943_130 Hb_082407_010 Hb_082407_010 Hb_000268_010--Hb_082407_010 Hb_004807_060 Hb_004807_060 Hb_000268_010--Hb_004807_060 Hb_002742_050 Hb_002742_050 Hb_000268_010--Hb_002742_050 Hb_000268_010--Hb_002289_120 Hb_000186_190 Hb_000186_190 Hb_014783_010--Hb_000186_190 Hb_014783_010--Hb_003943_130 Hb_014783_010--Hb_002289_120 Hb_001357_100 Hb_001357_100 Hb_014783_010--Hb_001357_100 Hb_000101_270 Hb_000101_270 Hb_014783_010--Hb_000101_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.295738 0.127477 0.0195347 0.275047 0.0230673 0.149194
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.225761 0.443862 0.0812101 0.0715575 0

CAGE analysis