Hb_006502_040

Information

Type transcription factor
Description TF Family: bHLH
Location Contig6502: 24808-32078
Sequence    

Annotation

kegg
ID rcu:RCOM_0275800
description Transcription factor ICE1, putative
nr
ID XP_002534354.1
description Transcription factor ICE1, putative [Ricinus communis]
swissprot
ID Q8GX46
description Transcription factor bHLH91 OS=Arabidopsis thaliana GN=BHLH91 PE=2 SV=1
trembl
ID B9T7Y5
description Transcription factor ICE1, putative OS=Ricinus communis GN=RCOM_0275800 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh91-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006502_040 0.0 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
2 Hb_010812_090 0.1623336609 - - PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]
3 Hb_000861_050 0.1912719108 - - PREDICTED: transcription elongation factor SPT6-like isoform X1 [Populus euphratica]
4 Hb_003893_080 0.1922101425 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000567_280 0.2071917911 - - PREDICTED: uncharacterized protein At4g06598-like [Populus euphratica]
6 Hb_159191_010 0.2340558772 - - protease inhibitor protein [Hevea brasiliensis]
7 Hb_002259_050 0.2368996521 - - unnamed protein product [Vitis vinifera]
8 Hb_002431_060 0.2370768595 - - -
9 Hb_000714_010 0.2406997511 - - PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]
10 Hb_000599_050 0.2408706354 - - vacuolar ATP synthase subunit G plant, putative [Ricinus communis]
11 Hb_003050_070 0.2455227317 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001671_060 0.2455897952 - - fad NAD binding oxidoreductases, putative [Ricinus communis]
13 Hb_005410_030 0.2499454411 - - glutaredoxin 2 [Hevea brasiliensis]
14 Hb_026428_010 0.2504001975 - - copper transport protein ATOX1 [Hevea brasiliensis]
15 Hb_000005_030 0.2514773032 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
16 Hb_003992_120 0.2529132933 - - hypothetical protein MTR_6g089560 [Medicago truncatula]
17 Hb_002233_110 0.2567554807 - - PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
18 Hb_000922_180 0.2588966311 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO5 [Jatropha curcas]
19 Hb_000501_020 0.2621641458 - - PREDICTED: uncharacterized protein LOC100250168 [Vitis vinifera]
20 Hb_032660_020 0.2628034066 - - PREDICTED: F-box protein At5g49610-like [Jatropha curcas]

Gene co-expression network

sample Hb_006502_040 Hb_006502_040 Hb_010812_090 Hb_010812_090 Hb_006502_040--Hb_010812_090 Hb_000861_050 Hb_000861_050 Hb_006502_040--Hb_000861_050 Hb_003893_080 Hb_003893_080 Hb_006502_040--Hb_003893_080 Hb_000567_280 Hb_000567_280 Hb_006502_040--Hb_000567_280 Hb_159191_010 Hb_159191_010 Hb_006502_040--Hb_159191_010 Hb_002259_050 Hb_002259_050 Hb_006502_040--Hb_002259_050 Hb_003992_120 Hb_003992_120 Hb_010812_090--Hb_003992_120 Hb_010128_110 Hb_010128_110 Hb_010812_090--Hb_010128_110 Hb_010812_090--Hb_000567_280 Hb_010812_090--Hb_000861_050 Hb_074197_010 Hb_074197_010 Hb_010812_090--Hb_074197_010 Hb_005410_030 Hb_005410_030 Hb_000861_050--Hb_005410_030 Hb_000052_010 Hb_000052_010 Hb_000861_050--Hb_000052_010 Hb_003023_050 Hb_003023_050 Hb_000861_050--Hb_003023_050 Hb_004055_060 Hb_004055_060 Hb_000861_050--Hb_004055_060 Hb_000714_010 Hb_000714_010 Hb_000861_050--Hb_000714_010 Hb_000005_030 Hb_000005_030 Hb_000861_050--Hb_000005_030 Hb_002431_060 Hb_002431_060 Hb_003893_080--Hb_002431_060 Hb_003893_080--Hb_000714_010 Hb_003893_080--Hb_000861_050 Hb_000599_050 Hb_000599_050 Hb_003893_080--Hb_000599_050 Hb_003592_070 Hb_003592_070 Hb_003893_080--Hb_003592_070 Hb_003050_070 Hb_003050_070 Hb_000567_280--Hb_003050_070 Hb_000567_280--Hb_159191_010 Hb_104010_010 Hb_104010_010 Hb_000567_280--Hb_104010_010 Hb_000091_100 Hb_000091_100 Hb_000567_280--Hb_000091_100 Hb_001741_090 Hb_001741_090 Hb_000567_280--Hb_001741_090 Hb_002835_220 Hb_002835_220 Hb_000567_280--Hb_002835_220 Hb_159191_010--Hb_003050_070 Hb_007809_090 Hb_007809_090 Hb_159191_010--Hb_007809_090 Hb_001671_060 Hb_001671_060 Hb_159191_010--Hb_001671_060 Hb_001507_070 Hb_001507_070 Hb_159191_010--Hb_001507_070 Hb_159191_010--Hb_000714_010 Hb_081207_010 Hb_081207_010 Hb_002259_050--Hb_081207_010 Hb_175450_010 Hb_175450_010 Hb_002259_050--Hb_175450_010 Hb_000445_220 Hb_000445_220 Hb_002259_050--Hb_000445_220 Hb_006922_040 Hb_006922_040 Hb_002259_050--Hb_006922_040 Hb_002259_050--Hb_002431_060 Hb_002228_090 Hb_002228_090 Hb_002259_050--Hb_002228_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.2628 0.0334831 0.00688802 0.0196513 0 0.172337
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.78346 1.30781 0.269657 0.0125253 0.0333997

CAGE analysis