Hb_005375_040

Information

Type -
Description -
Location Contig5375: 43204-57968
Sequence    

Annotation

kegg
ID rcu:RCOM_1340690
description dicer-1, putative (EC:3.1.26.3)
nr
ID XP_002515097.1
description dicer-1, putative [Ricinus communis]
swissprot
ID Q9SP32
description Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana GN=DCL1 PE=1 SV=2
trembl
ID B9RMV8
description Dicer-1, putative OS=Ricinus communis GN=RCOM_1340690 PE=4 SV=1
Gene Ontology
ID GO:0003723
description endoribonuclease dicer homolog 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47611: 54605-54782 , PASA_asmbl_47612: 55750-56148
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005375_040 0.0 - - dicer-1, putative [Ricinus communis]
2 Hb_015026_070 0.1175471601 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 isoform X1 [Jatropha curcas]
3 Hb_002374_350 0.1248235736 - - PREDICTED: delta-aminolevulinic acid dehydratase, chloroplastic [Populus euphratica]
4 Hb_003206_030 0.1306292229 - - PREDICTED: uncharacterized protein LOC105632652 [Jatropha curcas]
5 Hb_124677_060 0.1317165322 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
6 Hb_000333_100 0.1372811733 - - PREDICTED: tubulin--tyrosine ligase-like protein 12 isoform X1 [Jatropha curcas]
7 Hb_000575_080 0.1398309445 - - PREDICTED: CD2 antigen cytoplasmic tail-binding protein 2 isoform X1 [Jatropha curcas]
8 Hb_000865_080 0.1412521908 - - arsenite-resistance protein, putative [Ricinus communis]
9 Hb_025623_020 0.1426482207 - - PREDICTED: uncharacterized protein LOC105646971 [Jatropha curcas]
10 Hb_003935_030 0.1435860914 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
11 Hb_001059_100 0.1436598549 - - PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1 [Jatropha curcas]
12 Hb_185679_010 0.1464750985 - - serine/threonine-protein kinase rio2, putative [Ricinus communis]
13 Hb_004108_140 0.1484496552 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
14 Hb_002745_010 0.1485272745 - - PREDICTED: SUMO-conjugating enzyme SCE1 [Cucumis sativus]
15 Hb_004032_180 0.1488746495 - - PREDICTED: myosin heavy chain, non-muscle [Jatropha curcas]
16 Hb_000181_180 0.1492840607 - - PREDICTED: uncharacterized protein LOC105637608 [Jatropha curcas]
17 Hb_000218_010 0.1502956612 - - -
18 Hb_001301_230 0.1519712436 - - PREDICTED: uncharacterized protein LOC105632949 isoform X2 [Jatropha curcas]
19 Hb_002477_150 0.1528199489 transcription factor TF Family: Alfin-like DNA binding protein, putative [Ricinus communis]
20 Hb_003994_240 0.1534553137 - - Mediator subunit 8 isoform 3 [Theobroma cacao]

Gene co-expression network

sample Hb_005375_040 Hb_005375_040 Hb_015026_070 Hb_015026_070 Hb_005375_040--Hb_015026_070 Hb_002374_350 Hb_002374_350 Hb_005375_040--Hb_002374_350 Hb_003206_030 Hb_003206_030 Hb_005375_040--Hb_003206_030 Hb_124677_060 Hb_124677_060 Hb_005375_040--Hb_124677_060 Hb_000333_100 Hb_000333_100 Hb_005375_040--Hb_000333_100 Hb_000575_080 Hb_000575_080 Hb_005375_040--Hb_000575_080 Hb_076693_020 Hb_076693_020 Hb_015026_070--Hb_076693_020 Hb_023827_040 Hb_023827_040 Hb_015026_070--Hb_023827_040 Hb_002745_010 Hb_002745_010 Hb_015026_070--Hb_002745_010 Hb_045793_010 Hb_045793_010 Hb_015026_070--Hb_045793_010 Hb_001059_100 Hb_001059_100 Hb_015026_070--Hb_001059_100 Hb_015026_070--Hb_124677_060 Hb_002374_350--Hb_000333_100 Hb_004225_130 Hb_004225_130 Hb_002374_350--Hb_004225_130 Hb_004037_030 Hb_004037_030 Hb_002374_350--Hb_004037_030 Hb_000160_220 Hb_000160_220 Hb_002374_350--Hb_000160_220 Hb_002411_120 Hb_002411_120 Hb_002374_350--Hb_002411_120 Hb_056196_050 Hb_056196_050 Hb_002374_350--Hb_056196_050 Hb_000181_180 Hb_000181_180 Hb_003206_030--Hb_000181_180 Hb_000421_120 Hb_000421_120 Hb_003206_030--Hb_000421_120 Hb_002813_010 Hb_002813_010 Hb_003206_030--Hb_002813_010 Hb_030565_090 Hb_030565_090 Hb_003206_030--Hb_030565_090 Hb_002477_150 Hb_002477_150 Hb_003206_030--Hb_002477_150 Hb_000865_080 Hb_000865_080 Hb_003206_030--Hb_000865_080 Hb_001053_030 Hb_001053_030 Hb_124677_060--Hb_001053_030 Hb_124677_060--Hb_002745_010 Hb_124677_060--Hb_001059_100 Hb_000140_070 Hb_000140_070 Hb_124677_060--Hb_000140_070 Hb_001220_030 Hb_001220_030 Hb_124677_060--Hb_001220_030 Hb_000340_110 Hb_000340_110 Hb_124677_060--Hb_000340_110 Hb_006913_040 Hb_006913_040 Hb_000333_100--Hb_006913_040 Hb_007643_050 Hb_007643_050 Hb_000333_100--Hb_007643_050 Hb_031091_010 Hb_031091_010 Hb_000333_100--Hb_031091_010 Hb_008695_120 Hb_008695_120 Hb_000333_100--Hb_008695_120 Hb_001019_170 Hb_001019_170 Hb_000333_100--Hb_001019_170 Hb_001307_140 Hb_001307_140 Hb_000575_080--Hb_001307_140 Hb_000270_020 Hb_000270_020 Hb_000575_080--Hb_000270_020 Hb_050455_010 Hb_050455_010 Hb_000575_080--Hb_050455_010 Hb_000088_020 Hb_000088_020 Hb_000575_080--Hb_000088_020 Hb_003299_090 Hb_003299_090 Hb_000575_080--Hb_003299_090 Hb_007317_190 Hb_007317_190 Hb_000575_080--Hb_007317_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.3491 2.79343 0.507295 0.392167 1.33804 3.27783
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.97595 0.958144 0.548271 1.26604 0.572812

CAGE analysis