Hb_004785_210

Information

Type -
Description -
Location Contig4785: 285421-288985
Sequence    

Annotation

kegg
ID vvi:100256491
description ABC transporter G family member 22-like
nr
ID KDP43029.1
description hypothetical protein JCGZ_25215 [Jatropha curcas]
swissprot
ID Q93YS4
description ABC transporter G family member 22 OS=Arabidopsis thaliana GN=ABCG22 PE=1 SV=1
trembl
ID A0A067LFX2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25215 PE=4 SV=1
Gene Ontology
ID GO:0016020
description abc transporter g family member 22-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44581: 287144-287280
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004785_210 0.0 - - hypothetical protein JCGZ_25215 [Jatropha curcas]
2 Hb_000887_030 0.0745435019 - - serine carboxypeptidase, putative [Ricinus communis]
3 Hb_000635_240 0.0915571639 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
4 Hb_001433_210 0.0924129061 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
5 Hb_001546_140 0.0963823578 - - Auxin-binding protein ABP19a precursor, putative [Ricinus communis]
6 Hb_031862_210 0.0965638402 - - hypothetical protein JCGZ_24955 [Jatropha curcas]
7 Hb_009692_050 0.09754894 - - -
8 Hb_147976_010 0.0985096341 - - -
9 Hb_009771_010 0.1016348218 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]
10 Hb_145502_010 0.1018845555 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82-like [Jatropha curcas]
11 Hb_000414_040 0.1021245551 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
12 Hb_007617_030 0.1025145497 - - hypothetical protein JCGZ_26801 [Jatropha curcas]
13 Hb_000174_120 0.1030877099 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
14 Hb_011316_080 0.1042320079 - - Cucumisin precursor, putative [Ricinus communis]
15 Hb_000836_620 0.1052270812 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
16 Hb_002284_290 0.1056672696 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
17 Hb_089140_130 0.1062016248 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
18 Hb_001153_170 0.1067341513 - - PREDICTED: protein HOTHEAD [Populus euphratica]
19 Hb_003598_070 0.1067620989 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002245_050 0.106877462 - - Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004785_210 Hb_004785_210 Hb_000887_030 Hb_000887_030 Hb_004785_210--Hb_000887_030 Hb_000635_240 Hb_000635_240 Hb_004785_210--Hb_000635_240 Hb_001433_210 Hb_001433_210 Hb_004785_210--Hb_001433_210 Hb_001546_140 Hb_001546_140 Hb_004785_210--Hb_001546_140 Hb_031862_210 Hb_031862_210 Hb_004785_210--Hb_031862_210 Hb_009692_050 Hb_009692_050 Hb_004785_210--Hb_009692_050 Hb_000887_030--Hb_001546_140 Hb_007617_030 Hb_007617_030 Hb_000887_030--Hb_007617_030 Hb_009771_010 Hb_009771_010 Hb_000887_030--Hb_009771_010 Hb_001153_170 Hb_001153_170 Hb_000887_030--Hb_001153_170 Hb_002929_030 Hb_002929_030 Hb_000887_030--Hb_002929_030 Hb_000887_030--Hb_031862_210 Hb_011316_080 Hb_011316_080 Hb_000635_240--Hb_011316_080 Hb_000635_240--Hb_001546_140 Hb_000635_240--Hb_009771_010 Hb_002245_050 Hb_002245_050 Hb_000635_240--Hb_002245_050 Hb_000635_240--Hb_001433_210 Hb_000635_240--Hb_002929_030 Hb_001433_210--Hb_009692_050 Hb_000414_040 Hb_000414_040 Hb_001433_210--Hb_000414_040 Hb_001433_210--Hb_001546_140 Hb_147976_010 Hb_147976_010 Hb_001433_210--Hb_147976_010 Hb_001433_210--Hb_031862_210 Hb_000174_120 Hb_000174_120 Hb_001433_210--Hb_000174_120 Hb_001546_140--Hb_009771_010 Hb_001546_140--Hb_007617_030 Hb_001546_140--Hb_001153_170 Hb_089140_130 Hb_089140_130 Hb_001546_140--Hb_089140_130 Hb_001546_140--Hb_011316_080 Hb_031862_210--Hb_147976_010 Hb_145502_010 Hb_145502_010 Hb_031862_210--Hb_145502_010 Hb_031862_210--Hb_009692_050 Hb_003598_070 Hb_003598_070 Hb_031862_210--Hb_003598_070 Hb_031862_210--Hb_007617_030 Hb_009692_050--Hb_147976_010 Hb_009692_050--Hb_003598_070 Hb_002284_290 Hb_002284_290 Hb_009692_050--Hb_002284_290 Hb_009692_050--Hb_000174_120 Hb_009692_050--Hb_000414_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.19801 0.262004 0 0.00809141
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0290257 0 0.74424

CAGE analysis