Hb_004147_060

Information

Type -
Description -
Location Contig4147: 85685-86189
Sequence    

Annotation

kegg
ID tcc:TCM_034544
description hypothetical protein
nr
ID XP_012068382.1
description PREDICTED: uncharacterized protein LOC105630996 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZ96
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15914 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41082: 86032-86466
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004147_060 0.0 - - PREDICTED: uncharacterized protein LOC105630996 [Jatropha curcas]
2 Hb_001296_030 0.2269106165 - - PREDICTED: uncharacterized protein LOC105638276 [Jatropha curcas]
3 Hb_042710_010 0.2388271333 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
4 Hb_000493_010 0.2506841675 - - hypothetical protein CICLE_v10021431mg [Citrus clementina]
5 Hb_014324_030 0.2520444187 - - PREDICTED: hydroxyacyl-thioester dehydratase type 2, mitochondrial [Fragaria vesca subsp. vesca]
6 Hb_000389_190 0.2521982693 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A1-like [Jatropha curcas]
7 Hb_000049_060 0.2524456073 - - unknown [Medicago truncatula]
8 Hb_074979_020 0.257335233 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_001155_030 0.2585411908 - - 60S ribosomal protein L10A [Hevea brasiliensis]
10 Hb_000001_070 0.2594542913 - - -
11 Hb_099387_010 0.2598619898 - - -
12 Hb_000039_170 0.2620985818 - - protein MOTHER of FT and TF 1-like [Jatropha curcas]
13 Hb_020035_020 0.2678912658 - - PREDICTED: uncharacterized protein LOC105631020 [Jatropha curcas]
14 Hb_002701_050 0.2693301532 - - PREDICTED: 60S ribosomal protein L7a-like [Jatropha curcas]
15 Hb_008841_010 0.2694437748 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
16 Hb_000648_030 0.2703519524 - - hypothetical protein PHAVU_002G055100g [Phaseolus vulgaris]
17 Hb_075359_010 0.2708161908 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
18 Hb_003058_220 0.2713108991 - - Pre-mRNA branch site protein p14, putative [Ricinus communis]
19 Hb_002272_090 0.2716145351 - - RING/U-box superfamily protein [Theobroma cacao]
20 Hb_001623_320 0.2727653916 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_004147_060 Hb_004147_060 Hb_001296_030 Hb_001296_030 Hb_004147_060--Hb_001296_030 Hb_042710_010 Hb_042710_010 Hb_004147_060--Hb_042710_010 Hb_000493_010 Hb_000493_010 Hb_004147_060--Hb_000493_010 Hb_014324_030 Hb_014324_030 Hb_004147_060--Hb_014324_030 Hb_000389_190 Hb_000389_190 Hb_004147_060--Hb_000389_190 Hb_000049_060 Hb_000049_060 Hb_004147_060--Hb_000049_060 Hb_001296_030--Hb_042710_010 Hb_008841_010 Hb_008841_010 Hb_001296_030--Hb_008841_010 Hb_001296_030--Hb_000493_010 Hb_000419_130 Hb_000419_130 Hb_001296_030--Hb_000419_130 Hb_075359_010 Hb_075359_010 Hb_001296_030--Hb_075359_010 Hb_000025_240 Hb_000025_240 Hb_001296_030--Hb_000025_240 Hb_042710_010--Hb_000419_130 Hb_020035_020 Hb_020035_020 Hb_042710_010--Hb_020035_020 Hb_042710_010--Hb_000493_010 Hb_007594_090 Hb_007594_090 Hb_042710_010--Hb_007594_090 Hb_001610_130 Hb_001610_130 Hb_042710_010--Hb_001610_130 Hb_000648_030 Hb_000648_030 Hb_000493_010--Hb_000648_030 Hb_000672_120 Hb_000672_120 Hb_000493_010--Hb_000672_120 Hb_000493_010--Hb_000419_130 Hb_007317_060 Hb_007317_060 Hb_000493_010--Hb_007317_060 Hb_002701_050 Hb_002701_050 Hb_014324_030--Hb_002701_050 Hb_001155_030 Hb_001155_030 Hb_014324_030--Hb_001155_030 Hb_001048_020 Hb_001048_020 Hb_014324_030--Hb_001048_020 Hb_000792_130 Hb_000792_130 Hb_014324_030--Hb_000792_130 Hb_007441_270 Hb_007441_270 Hb_014324_030--Hb_007441_270 Hb_000917_110 Hb_000917_110 Hb_014324_030--Hb_000917_110 Hb_000001_070 Hb_000001_070 Hb_000389_190--Hb_000001_070 Hb_000123_160 Hb_000123_160 Hb_000389_190--Hb_000123_160 Hb_000239_030 Hb_000239_030 Hb_000389_190--Hb_000239_030 Hb_002217_450 Hb_002217_450 Hb_000389_190--Hb_002217_450 Hb_002811_080 Hb_002811_080 Hb_000389_190--Hb_002811_080 Hb_004324_150 Hb_004324_150 Hb_000389_190--Hb_004324_150 Hb_004602_030 Hb_004602_030 Hb_000049_060--Hb_004602_030 Hb_012675_070 Hb_012675_070 Hb_000049_060--Hb_012675_070 Hb_005588_070 Hb_005588_070 Hb_000049_060--Hb_005588_070 Hb_000049_060--Hb_000493_010 Hb_172706_030 Hb_172706_030 Hb_000049_060--Hb_172706_030 Hb_001571_110 Hb_001571_110 Hb_000049_060--Hb_001571_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0810476 0.455635 0.718247 0.510401 0 3.81367
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.72709 4.06967 2.18433 1.22255 0

CAGE analysis