Hb_003549_070

Information

Type -
Description -
Location Contig3549: 57691-60648
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003549_070 0.0 - - -
2 Hb_001053_010 0.2162748142 - - PREDICTED: polygalacturonase-like [Jatropha curcas]
3 Hb_011214_120 0.2549681896 - - PREDICTED: uncharacterized protein LOC105636139 [Jatropha curcas]
4 Hb_002747_010 0.2618279245 - - PREDICTED: alcohol dehydrogenase-like 1 [Jatropha curcas]
5 Hb_002966_030 0.2619685308 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004834_020 0.2647519361 - - major allergen Pru ar 1-like [Jatropha curcas]
7 Hb_153457_010 0.2654547126 - - Miraculin precursor, putative [Ricinus communis]
8 Hb_124625_010 0.2689008047 - - hypothetical protein JCGZ_01142 [Jatropha curcas]
9 Hb_012779_010 0.2689314247 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
10 Hb_005396_010 0.2719163905 - - PREDICTED: interleukin enhancer-binding factor 3-B-like [Jatropha curcas]
11 Hb_050898_020 0.2722859562 - - hypothetical protein JCGZ_19965 [Jatropha curcas]
12 Hb_007320_040 0.2742810987 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
13 Hb_004324_200 0.2747814208 - - PREDICTED: transcription factor TRY-like [Populus euphratica]
14 Hb_175167_020 0.2753368794 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000589_210 0.2758008757 - - PREDICTED: uncharacterized protein LOC105647439 [Jatropha curcas]
16 Hb_000364_200 0.2767388839 - - o-methyltransferase, putative [Ricinus communis]
17 Hb_000772_070 0.2788099448 - - PREDICTED: uncharacterized protein LOC105649697 [Jatropha curcas]
18 Hb_000513_100 0.2798677611 - - germin-like protein GLP, partial [Manihot esculenta]
19 Hb_028008_010 0.2801089406 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
20 Hb_177880_010 0.2803652011 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]

Gene co-expression network

sample Hb_003549_070 Hb_003549_070 Hb_001053_010 Hb_001053_010 Hb_003549_070--Hb_001053_010 Hb_011214_120 Hb_011214_120 Hb_003549_070--Hb_011214_120 Hb_002747_010 Hb_002747_010 Hb_003549_070--Hb_002747_010 Hb_002966_030 Hb_002966_030 Hb_003549_070--Hb_002966_030 Hb_004834_020 Hb_004834_020 Hb_003549_070--Hb_004834_020 Hb_153457_010 Hb_153457_010 Hb_003549_070--Hb_153457_010 Hb_001053_010--Hb_004834_020 Hb_007320_040 Hb_007320_040 Hb_001053_010--Hb_007320_040 Hb_001053_010--Hb_002966_030 Hb_177880_010 Hb_177880_010 Hb_001053_010--Hb_177880_010 Hb_001053_010--Hb_002747_010 Hb_000772_070 Hb_000772_070 Hb_001053_010--Hb_000772_070 Hb_001959_030 Hb_001959_030 Hb_011214_120--Hb_001959_030 Hb_000589_210 Hb_000589_210 Hb_011214_120--Hb_000589_210 Hb_098030_010 Hb_098030_010 Hb_011214_120--Hb_098030_010 Hb_000364_200 Hb_000364_200 Hb_011214_120--Hb_000364_200 Hb_002016_020 Hb_002016_020 Hb_011214_120--Hb_002016_020 Hb_014834_020 Hb_014834_020 Hb_011214_120--Hb_014834_020 Hb_002747_010--Hb_002966_030 Hb_002747_010--Hb_153457_010 Hb_012779_010 Hb_012779_010 Hb_002747_010--Hb_012779_010 Hb_175167_020 Hb_175167_020 Hb_002747_010--Hb_175167_020 Hb_000513_100 Hb_000513_100 Hb_002747_010--Hb_000513_100 Hb_002747_010--Hb_007320_040 Hb_002966_030--Hb_153457_010 Hb_002966_030--Hb_007320_040 Hb_002966_030--Hb_175167_020 Hb_002966_030--Hb_012779_010 Hb_002966_030--Hb_177880_010 Hb_004834_020--Hb_177880_010 Hb_126535_010 Hb_126535_010 Hb_004834_020--Hb_126535_010 Hb_004834_020--Hb_007320_040 Hb_124247_030 Hb_124247_030 Hb_004834_020--Hb_124247_030 Hb_004834_020--Hb_175167_020 Hb_004834_020--Hb_002966_030 Hb_153457_010--Hb_012779_010 Hb_153457_010--Hb_175167_020 Hb_153457_010--Hb_000513_100 Hb_028008_010 Hb_028008_010 Hb_153457_010--Hb_028008_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0988506 0.233678 0.116422 0.124237
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.28604 0

CAGE analysis