Hb_001053_010

Information

Type -
Description -
Location Contig1053: 547-4394
Sequence    

Annotation

kegg
ID rcu:RCOM_0968450
description Polygalacturonase precursor, putative (EC:3.2.1.15)
nr
ID XP_012065574.1
description PREDICTED: polygalacturonase-like [Jatropha curcas]
swissprot
ID P35336
description Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1
trembl
ID A0A067L4X9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16769 PE=3 SV=1
Gene Ontology
ID GO:0016798
description polygalacturonase qrt2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01773: 2779-3042
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001053_010 0.0 - - PREDICTED: polygalacturonase-like [Jatropha curcas]
2 Hb_004834_020 0.0947943395 - - major allergen Pru ar 1-like [Jatropha curcas]
3 Hb_007320_040 0.1071433426 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
4 Hb_002966_030 0.1088465555 - - conserved hypothetical protein [Ricinus communis]
5 Hb_177880_010 0.1180148847 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
6 Hb_002747_010 0.1202810634 - - PREDICTED: alcohol dehydrogenase-like 1 [Jatropha curcas]
7 Hb_000772_070 0.1256825615 - - PREDICTED: uncharacterized protein LOC105649697 [Jatropha curcas]
8 Hb_050898_020 0.1270800062 - - hypothetical protein JCGZ_19965 [Jatropha curcas]
9 Hb_153457_010 0.1288869584 - - Miraculin precursor, putative [Ricinus communis]
10 Hb_175167_020 0.1365258721 - - conserved hypothetical protein [Ricinus communis]
11 Hb_126535_010 0.1366589778 - - hypothetical protein JCGZ_09554 [Jatropha curcas]
12 Hb_007897_040 0.137266649 - - ATP binding protein, putative [Ricinus communis]
13 Hb_124625_010 0.1374508145 - - hypothetical protein JCGZ_01142 [Jatropha curcas]
14 Hb_028008_010 0.1474628305 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
15 Hb_012532_020 0.1490599801 - - Isoflavone reductase, putative [Ricinus communis]
16 Hb_124247_030 0.1492337207 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Jatropha curcas]
17 Hb_012779_010 0.1496190102 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
18 Hb_005396_010 0.1537014326 - - PREDICTED: interleukin enhancer-binding factor 3-B-like [Jatropha curcas]
19 Hb_035583_010 0.1570338526 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
20 Hb_000513_100 0.1632463091 - - germin-like protein GLP, partial [Manihot esculenta]

Gene co-expression network

sample Hb_001053_010 Hb_001053_010 Hb_004834_020 Hb_004834_020 Hb_001053_010--Hb_004834_020 Hb_007320_040 Hb_007320_040 Hb_001053_010--Hb_007320_040 Hb_002966_030 Hb_002966_030 Hb_001053_010--Hb_002966_030 Hb_177880_010 Hb_177880_010 Hb_001053_010--Hb_177880_010 Hb_002747_010 Hb_002747_010 Hb_001053_010--Hb_002747_010 Hb_000772_070 Hb_000772_070 Hb_001053_010--Hb_000772_070 Hb_004834_020--Hb_177880_010 Hb_126535_010 Hb_126535_010 Hb_004834_020--Hb_126535_010 Hb_004834_020--Hb_007320_040 Hb_124247_030 Hb_124247_030 Hb_004834_020--Hb_124247_030 Hb_175167_020 Hb_175167_020 Hb_004834_020--Hb_175167_020 Hb_004834_020--Hb_002966_030 Hb_007320_040--Hb_177880_010 Hb_007320_040--Hb_002966_030 Hb_007320_040--Hb_126535_010 Hb_007320_040--Hb_124247_030 Hb_007320_040--Hb_002747_010 Hb_002966_030--Hb_002747_010 Hb_153457_010 Hb_153457_010 Hb_002966_030--Hb_153457_010 Hb_002966_030--Hb_175167_020 Hb_012779_010 Hb_012779_010 Hb_002966_030--Hb_012779_010 Hb_002966_030--Hb_177880_010 Hb_177880_010--Hb_126535_010 Hb_177880_010--Hb_124247_030 Hb_177880_010--Hb_175167_020 Hb_002747_010--Hb_153457_010 Hb_002747_010--Hb_012779_010 Hb_002747_010--Hb_175167_020 Hb_000513_100 Hb_000513_100 Hb_002747_010--Hb_000513_100 Hb_050898_020 Hb_050898_020 Hb_000772_070--Hb_050898_020 Hb_000772_070--Hb_007320_040 Hb_124625_010 Hb_124625_010 Hb_000772_070--Hb_124625_010 Hb_000668_070 Hb_000668_070 Hb_000772_070--Hb_000668_070 Hb_012532_020 Hb_012532_020 Hb_000772_070--Hb_012532_020 Hb_000836_400 Hb_000836_400 Hb_000772_070--Hb_000836_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.136256 0.272964 0.0542738 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.20694 0

CAGE analysis