Hb_003391_050

Information

Type -
Description -
Location Contig3391: 66495-67408
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003391_050 0.0 - - -
2 Hb_002805_140 0.2203915483 - - hypothetical protein POPTR_0001s28390g [Populus trichocarpa]
3 Hb_164225_010 0.2556305751 - - -
4 Hb_023647_040 0.3181692508 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
5 Hb_000334_200 0.3241073562 desease resistance Gene Name: RVT_1 PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
6 Hb_036693_010 0.3284253977 - - -
7 Hb_001396_170 0.3296315838 - - unnamed protein product [Vitis vinifera]
8 Hb_078568_010 0.335752383 - - hypothetical protein PRUPE_ppa013245mg [Prunus persica]
9 Hb_002232_150 0.3427552655 - - PREDICTED: squalene monooxygenase-like [Jatropha curcas]
10 Hb_049884_010 0.3428039042 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
11 Hb_111834_020 0.344608946 - - PREDICTED: protein phosphatase methylesterase 1 [Jatropha curcas]
12 Hb_006698_050 0.3503462929 - - Beta-glucosidase, putative [Ricinus communis]
13 Hb_012052_030 0.3513307692 - - -
14 Hb_010447_020 0.3583096708 - - PREDICTED: uncharacterized protein LOC105797464 [Gossypium raimondii]
15 Hb_000193_150 0.3596149097 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
16 Hb_001277_160 0.3629764697 - - hypothetical protein MIMGU_mgv1a019742mg, partial [Erythranthe guttata]
17 Hb_006816_340 0.3645460511 - - -
18 Hb_004800_210 0.3657317534 - - hypothetical protein POPTR_0007s12780g [Populus trichocarpa]
19 Hb_171062_010 0.3671011687 - - hypothetical protein VITISV_036059 [Vitis vinifera]
20 Hb_000099_090 0.3696887098 - - Na(+)/H(+) antiporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_003391_050 Hb_003391_050 Hb_002805_140 Hb_002805_140 Hb_003391_050--Hb_002805_140 Hb_164225_010 Hb_164225_010 Hb_003391_050--Hb_164225_010 Hb_023647_040 Hb_023647_040 Hb_003391_050--Hb_023647_040 Hb_000334_200 Hb_000334_200 Hb_003391_050--Hb_000334_200 Hb_036693_010 Hb_036693_010 Hb_003391_050--Hb_036693_010 Hb_001396_170 Hb_001396_170 Hb_003391_050--Hb_001396_170 Hb_007904_190 Hb_007904_190 Hb_002805_140--Hb_007904_190 Hb_001673_030 Hb_001673_030 Hb_002805_140--Hb_001673_030 Hb_002805_140--Hb_164225_010 Hb_004534_020 Hb_004534_020 Hb_002805_140--Hb_004534_020 Hb_006698_050 Hb_006698_050 Hb_002805_140--Hb_006698_050 Hb_049884_010 Hb_049884_010 Hb_164225_010--Hb_049884_010 Hb_055339_010 Hb_055339_010 Hb_164225_010--Hb_055339_010 Hb_003772_020 Hb_003772_020 Hb_164225_010--Hb_003772_020 Hb_002737_020 Hb_002737_020 Hb_164225_010--Hb_002737_020 Hb_164225_010--Hb_036693_010 Hb_181975_010 Hb_181975_010 Hb_023647_040--Hb_181975_010 Hb_023647_040--Hb_001396_170 Hb_001247_230 Hb_001247_230 Hb_023647_040--Hb_001247_230 Hb_001504_190 Hb_001504_190 Hb_023647_040--Hb_001504_190 Hb_001999_250 Hb_001999_250 Hb_023647_040--Hb_001999_250 Hb_002783_050 Hb_002783_050 Hb_023647_040--Hb_002783_050 Hb_000243_020 Hb_000243_020 Hb_000334_200--Hb_000243_020 Hb_000334_200--Hb_181975_010 Hb_002326_070 Hb_002326_070 Hb_000334_200--Hb_002326_070 Hb_097433_020 Hb_097433_020 Hb_000334_200--Hb_097433_020 Hb_002205_100 Hb_002205_100 Hb_000334_200--Hb_002205_100 Hb_000334_200--Hb_001396_170 Hb_005155_020 Hb_005155_020 Hb_036693_010--Hb_005155_020 Hb_005517_010 Hb_005517_010 Hb_036693_010--Hb_005517_010 Hb_000169_190 Hb_000169_190 Hb_036693_010--Hb_000169_190 Hb_012107_070 Hb_012107_070 Hb_036693_010--Hb_012107_070 Hb_000099_090 Hb_000099_090 Hb_036693_010--Hb_000099_090 Hb_012184_050 Hb_012184_050 Hb_036693_010--Hb_012184_050 Hb_062585_010 Hb_062585_010 Hb_001396_170--Hb_062585_010 Hb_001396_170--Hb_181975_010 Hb_000574_150 Hb_000574_150 Hb_001396_170--Hb_000574_150 Hb_007978_020 Hb_007978_020 Hb_001396_170--Hb_007978_020 Hb_000003_390 Hb_000003_390 Hb_001396_170--Hb_000003_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.83902 0.731562 0.448479 0 0 0.613562
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.24615 0 0.112302 0

CAGE analysis