Hb_002998_050

Information

Type -
Description -
Location Contig2998: 56524-60392
Sequence    

Annotation

kegg
ID sot:102596219
description probable leucine-rich repeat receptor-like protein kinase At1g35710-like
nr
ID XP_011091709.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Sesamum indicum]
swissprot
ID C0LGQ5
description LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1
trembl
ID A5BQC8
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030571 PE=4 SV=1
Gene Ontology
ID GO:0016740
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002998_050 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Sesamum indicum]
2 Hb_000270_210 0.2517729634 - - PREDICTED: transcription initiation factor IIB-2-like [Jatropha curcas]
3 Hb_000046_410 0.2561956071 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
4 Hb_000028_160 0.2623286769 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
5 Hb_000003_390 0.2664400346 - - hypothetical protein POPTR_0003s20040g [Populus trichocarpa]
6 Hb_000815_140 0.2699763062 - - cytochrome P450, putative [Ricinus communis]
7 Hb_000375_370 0.2817484235 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
8 Hb_010128_070 0.2818924672 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_000009_640 0.2845908179 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_12318 [Jatropha curcas]
10 Hb_170487_010 0.2880665337 - - -
11 Hb_000997_410 0.2882958535 - - PREDICTED: uncharacterized protein LOC105632066 [Jatropha curcas]
12 Hb_001195_100 0.288369195 - - PREDICTED: uncharacterized protein LOC105633812 [Jatropha curcas]
13 Hb_000193_150 0.289542157 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
14 Hb_001259_030 0.2931197997 - - PREDICTED: uncharacterized protein LOC105641270 [Jatropha curcas]
15 Hb_003106_150 0.2943382001 - - PREDICTED: U-box domain-containing protein 38-like [Jatropha curcas]
16 Hb_001396_170 0.2972385173 - - unnamed protein product [Vitis vinifera]
17 Hb_002918_090 0.2978056251 - - PREDICTED: auxin-repressed 12.5 kDa protein-like [Nelumbo nucifera]
18 Hb_001227_110 0.2985157846 - - U2 snrnp auxiliary factor, small subunit, putative [Ricinus communis]
19 Hb_002735_040 0.2987473088 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
20 Hb_023647_040 0.299042299 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]

Gene co-expression network

sample Hb_002998_050 Hb_002998_050 Hb_000270_210 Hb_000270_210 Hb_002998_050--Hb_000270_210 Hb_000046_410 Hb_000046_410 Hb_002998_050--Hb_000046_410 Hb_000028_160 Hb_000028_160 Hb_002998_050--Hb_000028_160 Hb_000003_390 Hb_000003_390 Hb_002998_050--Hb_000003_390 Hb_000815_140 Hb_000815_140 Hb_002998_050--Hb_000815_140 Hb_000375_370 Hb_000375_370 Hb_002998_050--Hb_000375_370 Hb_005389_110 Hb_005389_110 Hb_000270_210--Hb_005389_110 Hb_000640_150 Hb_000640_150 Hb_000270_210--Hb_000640_150 Hb_018344_010 Hb_018344_010 Hb_000270_210--Hb_018344_010 Hb_002232_150 Hb_002232_150 Hb_000270_210--Hb_002232_150 Hb_116125_010 Hb_116125_010 Hb_000270_210--Hb_116125_010 Hb_002735_040 Hb_002735_040 Hb_000270_210--Hb_002735_040 Hb_000046_410--Hb_000815_140 Hb_012384_050 Hb_012384_050 Hb_000046_410--Hb_012384_050 Hb_000046_410--Hb_000028_160 Hb_004361_050 Hb_004361_050 Hb_000046_410--Hb_004361_050 Hb_176844_010 Hb_176844_010 Hb_000046_410--Hb_176844_010 Hb_001138_010 Hb_001138_010 Hb_000046_410--Hb_001138_010 Hb_000028_160--Hb_000815_140 Hb_010128_070 Hb_010128_070 Hb_000028_160--Hb_010128_070 Hb_000742_210 Hb_000742_210 Hb_000028_160--Hb_000742_210 Hb_009620_030 Hb_009620_030 Hb_000028_160--Hb_009620_030 Hb_046931_010 Hb_046931_010 Hb_000028_160--Hb_046931_010 Hb_003064_030 Hb_003064_030 Hb_000028_160--Hb_003064_030 Hb_007257_050 Hb_007257_050 Hb_000003_390--Hb_007257_050 Hb_003157_010 Hb_003157_010 Hb_000003_390--Hb_003157_010 Hb_000997_410 Hb_000997_410 Hb_000003_390--Hb_000997_410 Hb_000003_390--Hb_000375_370 Hb_009028_030 Hb_009028_030 Hb_000003_390--Hb_009028_030 Hb_006501_020 Hb_006501_020 Hb_000003_390--Hb_006501_020 Hb_000815_140--Hb_003064_030 Hb_000815_140--Hb_010128_070 Hb_162286_020 Hb_162286_020 Hb_000815_140--Hb_162286_020 Hb_000815_140--Hb_012384_050 Hb_005122_060 Hb_005122_060 Hb_000375_370--Hb_005122_060 Hb_031089_030 Hb_031089_030 Hb_000375_370--Hb_031089_030 Hb_001247_140 Hb_001247_140 Hb_000375_370--Hb_001247_140 Hb_006816_410 Hb_006816_410 Hb_000375_370--Hb_006816_410 Hb_000375_370--Hb_006501_020 Hb_000365_060 Hb_000365_060 Hb_000375_370--Hb_000365_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.292324 0.0955538 0.0343425 0.0182167 0.0444695 0.177648
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.105014 0 0 0.0664742 0

CAGE analysis