Hb_002835_250

Information

Type -
Description -
Location Contig2835: 213217-213931
Sequence    

Annotation

kegg
ID pop:POPTR_0015s09500g
description POPTRDRAFT_575231; octicosapeptide/Phox/Bem1p domain-containing family protein
nr
ID XP_002321629.1
description octicosapeptide/Phox/Bem1p domain-containing family protein [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9IEY3
description Octicosapeptide/Phox/Bem1p domain-containing family protein OS=Populus trichocarpa GN=POPTR_0015s09500g PE=4 SV=1
Gene Ontology
ID GO:0005634
description octicosapeptide phox bem1p family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002835_250 0.0 - - octicosapeptide/Phox/Bem1p domain-containing family protein [Populus trichocarpa]
2 Hb_022693_050 0.1037828201 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
3 Hb_029223_050 0.1548309507 - - PREDICTED: uncharacterized protein LOC105642267 isoform X1 [Jatropha curcas]
4 Hb_010921_030 0.1594429289 transcription factor TF Family: PHD PREDICTED: PHD finger protein At2g01810 [Jatropha curcas]
5 Hb_001053_030 0.1656190994 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
6 Hb_000243_380 0.1667796725 - - PREDICTED: histone H1 [Jatropha curcas]
7 Hb_012226_010 0.1688905851 - - PREDICTED: protein DGCR14 [Jatropha curcas]
8 Hb_000069_230 0.1744632156 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]
9 Hb_001225_090 0.174764038 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
10 Hb_011512_120 0.1763202175 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 1 [Jatropha curcas]
11 Hb_003120_050 0.1774683893 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
12 Hb_001348_150 0.1798824826 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic [Jatropha curcas]
13 Hb_026198_040 0.1819283507 - - PREDICTED: uncharacterized protein LOC105628901 [Jatropha curcas]
14 Hb_003097_100 0.1819803692 - - probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic [Jatropha curcas]
15 Hb_028207_040 0.1831465971 - - PREDICTED: beta-hexosaminidase 2 [Jatropha curcas]
16 Hb_146464_010 0.184385738 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
17 Hb_000340_110 0.1847578061 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X1 [Jatropha curcas]
18 Hb_004440_040 0.1874137185 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_001205_030 0.1896514044 transcription factor TF Family: zf-HD hypothetical protein POPTR_0007s12970g [Populus trichocarpa]
20 Hb_001525_010 0.1907810187 - - PREDICTED: uncharacterized protein LOC105638298 [Jatropha curcas]

Gene co-expression network

sample Hb_002835_250 Hb_002835_250 Hb_022693_050 Hb_022693_050 Hb_002835_250--Hb_022693_050 Hb_029223_050 Hb_029223_050 Hb_002835_250--Hb_029223_050 Hb_010921_030 Hb_010921_030 Hb_002835_250--Hb_010921_030 Hb_001053_030 Hb_001053_030 Hb_002835_250--Hb_001053_030 Hb_000243_380 Hb_000243_380 Hb_002835_250--Hb_000243_380 Hb_012226_010 Hb_012226_010 Hb_002835_250--Hb_012226_010 Hb_003097_100 Hb_003097_100 Hb_022693_050--Hb_003097_100 Hb_022693_050--Hb_010921_030 Hb_000069_230 Hb_000069_230 Hb_022693_050--Hb_000069_230 Hb_003078_050 Hb_003078_050 Hb_022693_050--Hb_003078_050 Hb_003120_050 Hb_003120_050 Hb_022693_050--Hb_003120_050 Hb_000340_110 Hb_000340_110 Hb_029223_050--Hb_000340_110 Hb_001511_110 Hb_001511_110 Hb_029223_050--Hb_001511_110 Hb_026198_040 Hb_026198_040 Hb_029223_050--Hb_026198_040 Hb_001141_370 Hb_001141_370 Hb_029223_050--Hb_001141_370 Hb_000544_060 Hb_000544_060 Hb_029223_050--Hb_000544_060 Hb_104265_030 Hb_104265_030 Hb_029223_050--Hb_104265_030 Hb_001205_030 Hb_001205_030 Hb_010921_030--Hb_001205_030 Hb_000953_050 Hb_000953_050 Hb_010921_030--Hb_000953_050 Hb_010921_030--Hb_000243_380 Hb_010921_030--Hb_029223_050 Hb_000003_550 Hb_000003_550 Hb_010921_030--Hb_000003_550 Hb_003752_100 Hb_003752_100 Hb_010921_030--Hb_003752_100 Hb_124677_060 Hb_124677_060 Hb_001053_030--Hb_124677_060 Hb_001053_030--Hb_000340_110 Hb_002745_010 Hb_002745_010 Hb_001053_030--Hb_002745_010 Hb_000336_140 Hb_000336_140 Hb_001053_030--Hb_000336_140 Hb_001053_030--Hb_000243_380 Hb_144824_010 Hb_144824_010 Hb_001053_030--Hb_144824_010 Hb_000243_380--Hb_001511_110 Hb_000243_380--Hb_000340_110 Hb_000243_380--Hb_029223_050 Hb_000243_380--Hb_002745_010 Hb_000243_380--Hb_144824_010 Hb_012226_010--Hb_000340_110 Hb_003125_030 Hb_003125_030 Hb_012226_010--Hb_003125_030 Hb_012226_010--Hb_029223_050 Hb_012226_010--Hb_104265_030 Hb_012226_010--Hb_001511_110 Hb_012226_010--Hb_026198_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.74599 6.14855 0.730894 0.265714 1.81615 1.39796
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.987712 1.78544 1.08852 0.318071 0.903498

CAGE analysis