Hb_002007_300

Information

Type -
Description -
Location Contig2007: 203629-205982
Sequence    

Annotation

kegg
ID rcu:RCOM_1428870
description Pre-rRNA-processing protein TSR2, putative
nr
ID KDP23617.1
description hypothetical protein JCGZ_23450 [Jatropha curcas]
swissprot
ID Q3T090
description Pre-rRNA-processing protein TSR2 homolog OS=Bos taurus GN=TSR2 PE=2 SV=1
trembl
ID A0A067JIA4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23450 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20403: 203679-205895
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002007_300 0.0 - - hypothetical protein JCGZ_23450 [Jatropha curcas]
2 Hb_046049_010 0.0998073636 - - PREDICTED: far upstream element-binding protein 2 isoform X3 [Jatropha curcas]
3 Hb_001178_100 0.1012033461 - - 60S acidic ribosomal protein P2-4 [Theobroma cacao]
4 Hb_003363_110 0.1157882434 - - protein with unknown function [Ricinus communis]
5 Hb_011970_030 0.1179550276 - - PREDICTED: uncharacterized protein LOC105641805 [Jatropha curcas]
6 Hb_002918_210 0.1194239389 - - PREDICTED: uncharacterized protein LOC105138897 isoform X2 [Populus euphratica]
7 Hb_003292_040 0.1215307926 transcription factor TF Family: MBF1 uncharacterized protein LOC100500420 [Glycine max]
8 Hb_005322_040 0.1226430643 - - 60S ribosomal protein L9, putative [Ricinus communis]
9 Hb_012340_080 0.1245487392 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
10 Hb_000012_220 0.1246228989 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001159_140 0.1252062059 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
12 Hb_000141_040 0.1256650455 - - hypothetical protein CICLE_v10022858mg [Citrus clementina]
13 Hb_028841_030 0.1272302199 - - -
14 Hb_000933_180 0.1272950554 - - PREDICTED: chorismate mutase 3, chloroplastic [Jatropha curcas]
15 Hb_001564_130 0.1273186745 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_021419_020 0.1282553977 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
17 Hb_002868_010 0.1288110777 - - 60S ribosomal protein L30, putative [Ricinus communis]
18 Hb_002233_150 0.1305256906 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
19 Hb_004884_220 0.1306960283 - - hypothetical protein 29 [Hevea brasiliensis]
20 Hb_000395_290 0.1309452053 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-8 [Jatropha curcas]

Gene co-expression network

sample Hb_002007_300 Hb_002007_300 Hb_046049_010 Hb_046049_010 Hb_002007_300--Hb_046049_010 Hb_001178_100 Hb_001178_100 Hb_002007_300--Hb_001178_100 Hb_003363_110 Hb_003363_110 Hb_002007_300--Hb_003363_110 Hb_011970_030 Hb_011970_030 Hb_002007_300--Hb_011970_030 Hb_002918_210 Hb_002918_210 Hb_002007_300--Hb_002918_210 Hb_003292_040 Hb_003292_040 Hb_002007_300--Hb_003292_040 Hb_000917_110 Hb_000917_110 Hb_046049_010--Hb_000917_110 Hb_064264_010 Hb_064264_010 Hb_046049_010--Hb_064264_010 Hb_004800_230 Hb_004800_230 Hb_046049_010--Hb_004800_230 Hb_002868_010 Hb_002868_010 Hb_046049_010--Hb_002868_010 Hb_001946_210 Hb_001946_210 Hb_046049_010--Hb_001946_210 Hb_002660_080 Hb_002660_080 Hb_046049_010--Hb_002660_080 Hb_003939_080 Hb_003939_080 Hb_001178_100--Hb_003939_080 Hb_028841_030 Hb_028841_030 Hb_001178_100--Hb_028841_030 Hb_000101_270 Hb_000101_270 Hb_001178_100--Hb_000101_270 Hb_000487_250 Hb_000487_250 Hb_001178_100--Hb_000487_250 Hb_001178_100--Hb_002868_010 Hb_000494_020 Hb_000494_020 Hb_003363_110--Hb_000494_020 Hb_003363_110--Hb_028841_030 Hb_010407_040 Hb_010407_040 Hb_003363_110--Hb_010407_040 Hb_002233_150 Hb_002233_150 Hb_003363_110--Hb_002233_150 Hb_005186_050 Hb_005186_050 Hb_003363_110--Hb_005186_050 Hb_145880_030 Hb_145880_030 Hb_003363_110--Hb_145880_030 Hb_011970_030--Hb_003292_040 Hb_011970_030--Hb_002233_150 Hb_005618_160 Hb_005618_160 Hb_011970_030--Hb_005618_160 Hb_000640_240 Hb_000640_240 Hb_011970_030--Hb_000640_240 Hb_001454_400 Hb_001454_400 Hb_011970_030--Hb_001454_400 Hb_001564_130 Hb_001564_130 Hb_011970_030--Hb_001564_130 Hb_003050_200 Hb_003050_200 Hb_002918_210--Hb_003050_200 Hb_000808_250 Hb_000808_250 Hb_002918_210--Hb_000808_250 Hb_002918_210--Hb_003292_040 Hb_001348_070 Hb_001348_070 Hb_002918_210--Hb_001348_070 Hb_002918_210--Hb_001564_130 Hb_000663_040 Hb_000663_040 Hb_002918_210--Hb_000663_040 Hb_003292_040--Hb_001564_130 Hb_000670_020 Hb_000670_020 Hb_003292_040--Hb_000670_020 Hb_000610_010 Hb_000610_010 Hb_003292_040--Hb_000610_010 Hb_003687_230 Hb_003687_230 Hb_003292_040--Hb_003687_230 Hb_003292_040--Hb_002233_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
84.2474 27.0414 34.8495 40.0262 80.0799 40.9873
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.9245 127.854 31.2794 25.8315 8.78077

CAGE analysis