Hb_001231_040

Information

Type -
Description -
Location Contig1231: 93789-94163
Sequence    

Annotation

kegg
ID pop:POPTR_0006s06470g
description hypothetical protein
nr
ID XP_006381112.1
description hypothetical protein POPTR_0006s06470g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5G9C2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s06470g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07036: 93927-94372
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001231_040 0.0 - - hypothetical protein POPTR_0006s06470g [Populus trichocarpa]
2 Hb_185754_010 0.2681822981 - - receptor protein kinase, putative [Ricinus communis]
3 Hb_088117_010 0.2785504577 - - receptor protein kinase, putative [Ricinus communis]
4 Hb_139569_010 0.3215040421 - - hypothetical protein JCGZ_24635 [Jatropha curcas]
5 Hb_001369_290 0.3310893311 - - receptor protein kinase, putative [Ricinus communis]
6 Hb_032264_090 0.333725199 - - hypothetical protein JCGZ_02512 [Jatropha curcas]
7 Hb_004453_190 0.3434279281 - - -
8 Hb_026186_010 0.3500334374 - - hypothetical protein JCGZ_06344 [Jatropha curcas]
9 Hb_005054_250 0.3511258575 - - PREDICTED: uncharacterized acetyltransferase At3g50280 [Jatropha curcas]
10 Hb_000805_330 0.3539906575 - - PREDICTED: ricin-like [Elaeis guineensis]
11 Hb_007403_080 0.3549903599 - - conserved hypothetical protein [Ricinus communis]
12 Hb_026198_030 0.3596118472 - - PREDICTED: ABC transporter G family member 25 [Jatropha curcas]
13 Hb_001147_090 0.361948045 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
14 Hb_003023_080 0.3632752127 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
15 Hb_000003_430 0.3662648396 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
16 Hb_000172_630 0.3671413051 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
17 Hb_002078_210 0.3674350488 - - PREDICTED: cytochrome P450 78A5-like [Jatropha curcas]
18 Hb_000270_770 0.3727833439 - - PREDICTED: uncharacterized protein LOC105640410 [Jatropha curcas]
19 Hb_011416_020 0.3734985688 - - conserved hypothetical protein [Ricinus communis]
20 Hb_111881_030 0.3737491416 - - PREDICTED: uncharacterized protein LOC105645255 [Jatropha curcas]

Gene co-expression network

sample Hb_001231_040 Hb_001231_040 Hb_185754_010 Hb_185754_010 Hb_001231_040--Hb_185754_010 Hb_088117_010 Hb_088117_010 Hb_001231_040--Hb_088117_010 Hb_139569_010 Hb_139569_010 Hb_001231_040--Hb_139569_010 Hb_001369_290 Hb_001369_290 Hb_001231_040--Hb_001369_290 Hb_032264_090 Hb_032264_090 Hb_001231_040--Hb_032264_090 Hb_004453_190 Hb_004453_190 Hb_001231_040--Hb_004453_190 Hb_185754_010--Hb_088117_010 Hb_000172_630 Hb_000172_630 Hb_185754_010--Hb_000172_630 Hb_026186_010 Hb_026186_010 Hb_185754_010--Hb_026186_010 Hb_001016_020 Hb_001016_020 Hb_185754_010--Hb_001016_020 Hb_003023_080 Hb_003023_080 Hb_185754_010--Hb_003023_080 Hb_185754_010--Hb_139569_010 Hb_009252_120 Hb_009252_120 Hb_088117_010--Hb_009252_120 Hb_088117_010--Hb_000172_630 Hb_088117_010--Hb_026186_010 Hb_006816_160 Hb_006816_160 Hb_088117_010--Hb_006816_160 Hb_008725_190 Hb_008725_190 Hb_088117_010--Hb_008725_190 Hb_139569_010--Hb_004453_190 Hb_139569_010--Hb_001369_290 Hb_139569_010--Hb_026186_010 Hb_000216_010 Hb_000216_010 Hb_139569_010--Hb_000216_010 Hb_139569_010--Hb_088117_010 Hb_139569_010--Hb_001016_020 Hb_001369_290--Hb_026186_010 Hb_001369_290--Hb_000172_630 Hb_001369_290--Hb_088117_010 Hb_001369_290--Hb_185754_010 Hb_005694_030 Hb_005694_030 Hb_001369_290--Hb_005694_030 Hb_000008_110 Hb_000008_110 Hb_032264_090--Hb_000008_110 Hb_000210_090 Hb_000210_090 Hb_032264_090--Hb_000210_090 Hb_002110_240 Hb_002110_240 Hb_032264_090--Hb_002110_240 Hb_008173_030 Hb_008173_030 Hb_032264_090--Hb_008173_030 Hb_000638_210 Hb_000638_210 Hb_032264_090--Hb_000638_210 Hb_000672_150 Hb_000672_150 Hb_032264_090--Hb_000672_150 Hb_129105_010 Hb_129105_010 Hb_004453_190--Hb_129105_010 Hb_004453_190--Hb_001016_020 Hb_021596_060 Hb_021596_060 Hb_004453_190--Hb_021596_060 Hb_004453_190--Hb_026186_010 Hb_133661_010 Hb_133661_010 Hb_004453_190--Hb_133661_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.67356 0 1.78661 0.37537 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.651845 0.783182 0 0

CAGE analysis