Hb_001115_110

Information

Type transcription factor
Description TF Family: NAC
Location Contig1115: 137496-142754
Sequence    

Annotation

kegg
ID pmum:103326880
description NAC transcription factor NAM-B2-like
nr
ID AGL39713.1
description NAC transcription factor 057 [Jatropha curcas]
swissprot
ID A0SPJ6
description NAC transcription factor NAM-B2 OS=Triticum turgidum subsp. durum GN=NAM-B2 PE=2 SV=1
trembl
ID R4N7R6
description NAC transcription factor 057 OS=Jatropha curcas GN=JCGZ_08700 PE=4 SV=1
Gene Ontology
ID GO:0003677
description nac domain-containing protein 67-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001115_110 0.0 transcription factor TF Family: NAC NAC transcription factor 057 [Jatropha curcas]
2 Hb_009181_020 0.2596770689 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_000723_300 0.3074324346 - - -
4 Hb_000987_090 0.3429029778 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
5 Hb_001787_040 0.3530849047 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_116195_010 0.3616850383 - - -
7 Hb_142392_010 0.3655286824 - - PREDICTED: uncharacterized protein LOC105628741 [Jatropha curcas]
8 Hb_010680_010 0.3722300355 - - -
9 Hb_032202_030 0.3796397763 - - -
10 Hb_008507_050 0.38730993 - - PREDICTED: S-adenosylmethionine decarboxylase proenzyme-like [Jatropha curcas]
11 Hb_030619_010 0.3964116769 - - -
12 Hb_001773_020 0.4008662711 - - hypothetical protein POPTR_0016s00980g [Populus trichocarpa]
13 Hb_004374_060 0.4054526565 - - hypothetical protein POPTR_0003s13140g [Populus trichocarpa]
14 Hb_000861_090 0.4076524309 - - -
15 Hb_000275_040 0.4155868683 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
16 Hb_019219_020 0.4168381557 - - profilin-1 [Jatropha curcas]
17 Hb_001769_020 0.4228788187 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial-like [Jatropha curcas]
18 Hb_001252_150 0.4240031801 - - -
19 Hb_000173_100 0.4315726942 - - -
20 Hb_004374_050 0.4320093107 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001115_110 Hb_001115_110 Hb_009181_020 Hb_009181_020 Hb_001115_110--Hb_009181_020 Hb_000723_300 Hb_000723_300 Hb_001115_110--Hb_000723_300 Hb_000987_090 Hb_000987_090 Hb_001115_110--Hb_000987_090 Hb_001787_040 Hb_001787_040 Hb_001115_110--Hb_001787_040 Hb_116195_010 Hb_116195_010 Hb_001115_110--Hb_116195_010 Hb_142392_010 Hb_142392_010 Hb_001115_110--Hb_142392_010 Hb_000861_090 Hb_000861_090 Hb_009181_020--Hb_000861_090 Hb_009181_020--Hb_000723_300 Hb_027751_050 Hb_027751_050 Hb_009181_020--Hb_027751_050 Hb_031089_060 Hb_031089_060 Hb_009181_020--Hb_031089_060 Hb_000866_160 Hb_000866_160 Hb_009181_020--Hb_000866_160 Hb_002473_040 Hb_002473_040 Hb_000723_300--Hb_002473_040 Hb_000345_120 Hb_000345_120 Hb_000723_300--Hb_000345_120 Hb_019219_020 Hb_019219_020 Hb_000723_300--Hb_019219_020 Hb_000424_160 Hb_000424_160 Hb_000723_300--Hb_000424_160 Hb_000987_090--Hb_001787_040 Hb_007904_270 Hb_007904_270 Hb_000987_090--Hb_007904_270 Hb_000275_040 Hb_000275_040 Hb_000987_090--Hb_000275_040 Hb_000749_080 Hb_000749_080 Hb_000987_090--Hb_000749_080 Hb_000803_040 Hb_000803_040 Hb_000987_090--Hb_000803_040 Hb_032202_030 Hb_032202_030 Hb_000987_090--Hb_032202_030 Hb_000008_260 Hb_000008_260 Hb_001787_040--Hb_000008_260 Hb_102438_010 Hb_102438_010 Hb_001787_040--Hb_102438_010 Hb_009467_030 Hb_009467_030 Hb_001787_040--Hb_009467_030 Hb_037964_010 Hb_037964_010 Hb_001787_040--Hb_037964_010 Hb_159085_010 Hb_159085_010 Hb_001787_040--Hb_159085_010 Hb_116195_010--Hb_142392_010 Hb_008507_050 Hb_008507_050 Hb_116195_010--Hb_008507_050 Hb_010680_010 Hb_010680_010 Hb_116195_010--Hb_010680_010 Hb_004324_020 Hb_004324_020 Hb_116195_010--Hb_004324_020 Hb_008078_030 Hb_008078_030 Hb_116195_010--Hb_008078_030 Hb_020730_010 Hb_020730_010 Hb_116195_010--Hb_020730_010 Hb_142392_010--Hb_010680_010 Hb_001265_010 Hb_001265_010 Hb_142392_010--Hb_001265_010 Hb_080083_010 Hb_080083_010 Hb_142392_010--Hb_080083_010 Hb_145761_010 Hb_145761_010 Hb_142392_010--Hb_145761_010 Hb_000088_060 Hb_000088_060 Hb_142392_010--Hb_000088_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.031257 0 0 0.181873 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.057352 0.045122 0 0 0

CAGE analysis