Hb_009181_020

Information

Type -
Description -
Location Contig9181: 13505-18699
Sequence    

Annotation

kegg
ID rcu:RCOM_1299650
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002519389.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9M9X9
description Pentatricopeptide repeat-containing protein At1g06710, mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=3 SV=1
trembl
ID B9S070
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1299650 PE=4 SV=1
Gene Ontology
ID GO:0008568
description tetratricopeptide repeat -like superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009181_020 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000861_090 0.2459951011 - - -
3 Hb_001115_110 0.2596770689 transcription factor TF Family: NAC NAC transcription factor 057 [Jatropha curcas]
4 Hb_000723_300 0.3051606906 - - -
5 Hb_027751_050 0.3299473128 - - hypothetical protein JCGZ_05887 [Jatropha curcas]
6 Hb_031089_060 0.3304954504 - - -
7 Hb_000866_160 0.3316153185 - - PREDICTED: elicitor-responsive protein 3 [Populus euphratica]
8 Hb_001773_020 0.3591867662 - - hypothetical protein POPTR_0016s00980g [Populus trichocarpa]
9 Hb_002383_060 0.360266611 - - PREDICTED: uncharacterized protein LOC102596491 [Solanum tuberosum]
10 Hb_008507_050 0.3663123408 - - PREDICTED: S-adenosylmethionine decarboxylase proenzyme-like [Jatropha curcas]
11 Hb_001787_040 0.3688399917 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_000917_250 0.3877095177 - - PREDICTED: coiled-coil domain-containing protein 130-like [Populus euphratica]
13 Hb_000005_120 0.3955414362 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
14 Hb_000011_130 0.3955414362 - - lipase [Ricinus communis]
15 Hb_000046_140 0.3955414362 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000081_070 0.3955414362 - - -
17 Hb_000171_010 0.3955414362 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
18 Hb_000189_040 0.3955414362 - - hypothetical protein [Trichoderma aureoviride]
19 Hb_000210_170 0.3955414362 - - -
20 Hb_000252_010 0.3955414362 - - -

Gene co-expression network

sample Hb_009181_020 Hb_009181_020 Hb_000861_090 Hb_000861_090 Hb_009181_020--Hb_000861_090 Hb_001115_110 Hb_001115_110 Hb_009181_020--Hb_001115_110 Hb_000723_300 Hb_000723_300 Hb_009181_020--Hb_000723_300 Hb_027751_050 Hb_027751_050 Hb_009181_020--Hb_027751_050 Hb_031089_060 Hb_031089_060 Hb_009181_020--Hb_031089_060 Hb_000866_160 Hb_000866_160 Hb_009181_020--Hb_000866_160 Hb_000005_120 Hb_000005_120 Hb_000861_090--Hb_000005_120 Hb_000011_130 Hb_000011_130 Hb_000861_090--Hb_000011_130 Hb_000046_140 Hb_000046_140 Hb_000861_090--Hb_000046_140 Hb_000081_070 Hb_000081_070 Hb_000861_090--Hb_000081_070 Hb_000171_010 Hb_000171_010 Hb_000861_090--Hb_000171_010 Hb_000189_040 Hb_000189_040 Hb_000861_090--Hb_000189_040 Hb_001115_110--Hb_000723_300 Hb_000987_090 Hb_000987_090 Hb_001115_110--Hb_000987_090 Hb_001787_040 Hb_001787_040 Hb_001115_110--Hb_001787_040 Hb_116195_010 Hb_116195_010 Hb_001115_110--Hb_116195_010 Hb_142392_010 Hb_142392_010 Hb_001115_110--Hb_142392_010 Hb_002473_040 Hb_002473_040 Hb_000723_300--Hb_002473_040 Hb_000345_120 Hb_000345_120 Hb_000723_300--Hb_000345_120 Hb_019219_020 Hb_019219_020 Hb_000723_300--Hb_019219_020 Hb_000424_160 Hb_000424_160 Hb_000723_300--Hb_000424_160 Hb_002073_070 Hb_002073_070 Hb_027751_050--Hb_002073_070 Hb_002595_100 Hb_002595_100 Hb_027751_050--Hb_002595_100 Hb_002900_060 Hb_002900_060 Hb_027751_050--Hb_002900_060 Hb_013394_090 Hb_013394_090 Hb_027751_050--Hb_013394_090 Hb_027751_050--Hb_000861_090 Hb_027751_050--Hb_000005_120 Hb_031089_060--Hb_000866_160 Hb_000487_390 Hb_000487_390 Hb_031089_060--Hb_000487_390 Hb_001263_020 Hb_001263_020 Hb_031089_060--Hb_001263_020 Hb_012656_010 Hb_012656_010 Hb_031089_060--Hb_012656_010 Hb_003812_010 Hb_003812_010 Hb_031089_060--Hb_003812_010 Hb_001754_220 Hb_001754_220 Hb_031089_060--Hb_001754_220 Hb_000866_160--Hb_000487_390 Hb_000866_160--Hb_001263_020 Hb_000866_160--Hb_012656_010 Hb_000866_160--Hb_003812_010 Hb_000866_160--Hb_001754_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.447209 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0585907 0.115241 0 0 0

CAGE analysis