Hb_001104_180

Information

Type -
Description -
Location Contig1104: 214820-218314
Sequence    

Annotation

kegg
ID rcu:RCOM_0383010
description brix domain containing protein, putative
nr
ID XP_012072954.1
description PREDICTED: ribosome production factor 2 homolog isoform X1 [Jatropha curcas]
swissprot
ID Q9LUG5
description Ribosome production factor 2 homolog OS=Arabidopsis thaliana GN=At3g23620 PE=2 SV=1
trembl
ID A0A067KZN4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06743 PE=4 SV=1
Gene Ontology
ID GO:0001510
description ribosome production factor 2 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03260: 214770-217294 , PASA_asmbl_03261: 214770-217234
cDNA
(Sanger)
(ID:Location)		 002_L24.ab1: 215915-217294

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001104_180 0.0 - - PREDICTED: ribosome production factor 2 homolog isoform X1 [Jatropha curcas]
2 Hb_003964_070 0.0790049556 - - hypothetical protein JCGZ_15695 [Jatropha curcas]
3 Hb_010139_040 0.079648371 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_006620_020 0.0806238478 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
5 Hb_156973_010 0.0810274136 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000214_040 0.0824922773 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003417_020 0.082910871 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
8 Hb_009646_030 0.0831955093 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001926_030 0.0843331697 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
10 Hb_003665_060 0.0845384206 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
11 Hb_000207_130 0.0856980427 - - PREDICTED: calcium-dependent protein kinase 11 [Jatropha curcas]
12 Hb_001305_010 0.0862019486 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]
13 Hb_001142_030 0.0862073751 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
14 Hb_004093_090 0.0871287326 - - PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]
15 Hb_007075_040 0.0872682548 - - hypothetical protein CISIN_1g039518mg, partial [Citrus sinensis]
16 Hb_000230_560 0.0881780543 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
17 Hb_002918_030 0.0893131461 - - PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Jatropha curcas]
18 Hb_007317_110 0.0897561351 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
19 Hb_120410_010 0.0899291171 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
20 Hb_004055_150 0.089931466 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001104_180 Hb_001104_180 Hb_003964_070 Hb_003964_070 Hb_001104_180--Hb_003964_070 Hb_010139_040 Hb_010139_040 Hb_001104_180--Hb_010139_040 Hb_006620_020 Hb_006620_020 Hb_001104_180--Hb_006620_020 Hb_156973_010 Hb_156973_010 Hb_001104_180--Hb_156973_010 Hb_000214_040 Hb_000214_040 Hb_001104_180--Hb_000214_040 Hb_003417_020 Hb_003417_020 Hb_001104_180--Hb_003417_020 Hb_003665_060 Hb_003665_060 Hb_003964_070--Hb_003665_060 Hb_007317_110 Hb_007317_110 Hb_003964_070--Hb_007317_110 Hb_000120_670 Hb_000120_670 Hb_003964_070--Hb_000120_670 Hb_001357_350 Hb_001357_350 Hb_003964_070--Hb_001357_350 Hb_000345_240 Hb_000345_240 Hb_003964_070--Hb_000345_240 Hb_010381_090 Hb_010381_090 Hb_003964_070--Hb_010381_090 Hb_004221_020 Hb_004221_020 Hb_010139_040--Hb_004221_020 Hb_000072_220 Hb_000072_220 Hb_010139_040--Hb_000072_220 Hb_010457_030 Hb_010457_030 Hb_010139_040--Hb_010457_030 Hb_048937_040 Hb_048937_040 Hb_010139_040--Hb_048937_040 Hb_003728_080 Hb_003728_080 Hb_010139_040--Hb_003728_080 Hb_002835_370 Hb_002835_370 Hb_010139_040--Hb_002835_370 Hb_000853_230 Hb_000853_230 Hb_006620_020--Hb_000853_230 Hb_000879_200 Hb_000879_200 Hb_006620_020--Hb_000879_200 Hb_004055_150 Hb_004055_150 Hb_006620_020--Hb_004055_150 Hb_001926_030 Hb_001926_030 Hb_006620_020--Hb_001926_030 Hb_054865_100 Hb_054865_100 Hb_006620_020--Hb_054865_100 Hb_000174_110 Hb_000174_110 Hb_006620_020--Hb_000174_110 Hb_023386_020 Hb_023386_020 Hb_156973_010--Hb_023386_020 Hb_002175_030 Hb_002175_030 Hb_156973_010--Hb_002175_030 Hb_003125_160 Hb_003125_160 Hb_156973_010--Hb_003125_160 Hb_001258_090 Hb_001258_090 Hb_156973_010--Hb_001258_090 Hb_156973_010--Hb_000853_230 Hb_000403_050 Hb_000403_050 Hb_156973_010--Hb_000403_050 Hb_003605_130 Hb_003605_130 Hb_000214_040--Hb_003605_130 Hb_008864_110 Hb_008864_110 Hb_000214_040--Hb_008864_110 Hb_003680_150 Hb_003680_150 Hb_000214_040--Hb_003680_150 Hb_001828_160 Hb_001828_160 Hb_000214_040--Hb_001828_160 Hb_010193_050 Hb_010193_050 Hb_000214_040--Hb_010193_050 Hb_000309_040 Hb_000309_040 Hb_000214_040--Hb_000309_040 Hb_003126_050 Hb_003126_050 Hb_003417_020--Hb_003126_050 Hb_001305_010 Hb_001305_010 Hb_003417_020--Hb_001305_010 Hb_007691_030 Hb_007691_030 Hb_003417_020--Hb_007691_030 Hb_003175_010 Hb_003175_010 Hb_003417_020--Hb_003175_010 Hb_019280_040 Hb_019280_040 Hb_003417_020--Hb_019280_040 Hb_007951_060 Hb_007951_060 Hb_003417_020--Hb_007951_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
61.884 25.2931 38.009 31.7162 49.1482 50.9797
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.8012 49.763 35.9228 31.7338 21.4802

CAGE analysis