Hb_001025_070

Information

Type -
Description -
Location Contig1025: 75024-77019
Sequence    

Annotation

kegg
ID rcu:RCOM_1509470
description Stachyose synthase precursor, putative (EC:2.4.1.67)
nr
ID XP_002511349.1
description Stachyose synthase precursor, putative [Ricinus communis]
swissprot
ID Q8VWN6
description Galactinol--sucrose galactosyltransferase OS=Pisum sativum GN=RFS PE=1 SV=1
trembl
ID B9RAX4
description Stachyose synthase, putative OS=Ricinus communis GN=RCOM_1509470 PE=4 SV=1
Gene Ontology
ID GO:0016740
description galactinol--sucrose galactosyltransferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001025_070 0.0 - - Stachyose synthase precursor, putative [Ricinus communis]
2 Hb_002097_150 0.1459852514 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
3 Hb_147137_020 0.1655161478 - - hypothetical protein JCGZ_07227 [Jatropha curcas]
4 Hb_047833_010 0.1672754382 - - Avr9/Cf-9 rapidly elicited protein [Jatropha curcas]
5 Hb_034132_010 0.1719917875 - - hypothetical protein B456_007G015400 [Gossypium raimondii]
6 Hb_004157_080 0.1734833242 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT12 [Jatropha curcas]
7 Hb_001565_050 0.1747455091 - - PREDICTED: receptor-like protein kinase 5 [Eucalyptus grandis]
8 Hb_142691_010 0.175330793 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
9 Hb_000016_220 0.1759450721 transcription factor TF Family: AP2 CRT/DRE binding factor 1 [Hevea brasiliensis]
10 Hb_008579_010 0.1761087515 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
11 Hb_012691_040 0.1764185805 - - PREDICTED: cytochrome P450 81E8-like [Fragaria vesca subsp. vesca]
12 Hb_002486_030 0.1769242787 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
13 Hb_073423_010 0.1776912781 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_111908_010 0.1802285459 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_001514_110 0.1803361646 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004117_360 0.1830899708 - - hypothetical protein JCGZ_00367 [Jatropha curcas]
17 Hb_104855_020 0.1839964813 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_143232_020 0.1848937451 - - hypothetical protein JCGZ_20467 [Jatropha curcas]
19 Hb_005946_190 0.1850432953 - - hypothetical protein EUGRSUZ_C01051 [Eucalyptus grandis]
20 Hb_015978_040 0.1880330825 - - PREDICTED: uncharacterized protein LOC105642609 [Jatropha curcas]

Gene co-expression network

sample Hb_001025_070 Hb_001025_070 Hb_002097_150 Hb_002097_150 Hb_001025_070--Hb_002097_150 Hb_147137_020 Hb_147137_020 Hb_001025_070--Hb_147137_020 Hb_047833_010 Hb_047833_010 Hb_001025_070--Hb_047833_010 Hb_034132_010 Hb_034132_010 Hb_001025_070--Hb_034132_010 Hb_004157_080 Hb_004157_080 Hb_001025_070--Hb_004157_080 Hb_001565_050 Hb_001565_050 Hb_001025_070--Hb_001565_050 Hb_002097_150--Hb_047833_010 Hb_002097_150--Hb_147137_020 Hb_027214_060 Hb_027214_060 Hb_002097_150--Hb_027214_060 Hb_002097_150--Hb_004157_080 Hb_143232_020 Hb_143232_020 Hb_002097_150--Hb_143232_020 Hb_008579_010 Hb_008579_010 Hb_147137_020--Hb_008579_010 Hb_002486_030 Hb_002486_030 Hb_147137_020--Hb_002486_030 Hb_142691_010 Hb_142691_010 Hb_147137_020--Hb_142691_010 Hb_073423_010 Hb_073423_010 Hb_147137_020--Hb_073423_010 Hb_104855_020 Hb_104855_020 Hb_147137_020--Hb_104855_020 Hb_031862_150 Hb_031862_150 Hb_147137_020--Hb_031862_150 Hb_000142_010 Hb_000142_010 Hb_047833_010--Hb_000142_010 Hb_000563_460 Hb_000563_460 Hb_047833_010--Hb_000563_460 Hb_002311_490 Hb_002311_490 Hb_047833_010--Hb_002311_490 Hb_003053_060 Hb_003053_060 Hb_047833_010--Hb_003053_060 Hb_011671_290 Hb_011671_290 Hb_047833_010--Hb_011671_290 Hb_034132_010--Hb_001565_050 Hb_015978_040 Hb_015978_040 Hb_034132_010--Hb_015978_040 Hb_022768_010 Hb_022768_010 Hb_034132_010--Hb_022768_010 Hb_117602_010 Hb_117602_010 Hb_034132_010--Hb_117602_010 Hb_005843_080 Hb_005843_080 Hb_034132_010--Hb_005843_080 Hb_005725_180 Hb_005725_180 Hb_034132_010--Hb_005725_180 Hb_005946_190 Hb_005946_190 Hb_004157_080--Hb_005946_190 Hb_004117_360 Hb_004117_360 Hb_004157_080--Hb_004117_360 Hb_111908_010 Hb_111908_010 Hb_004157_080--Hb_111908_010 Hb_001514_110 Hb_001514_110 Hb_004157_080--Hb_001514_110 Hb_004157_080--Hb_005725_180 Hb_044026_010 Hb_044026_010 Hb_004157_080--Hb_044026_010 Hb_001565_050--Hb_142691_010 Hb_012691_040 Hb_012691_040 Hb_001565_050--Hb_012691_040 Hb_001565_050--Hb_015978_040 Hb_001565_050--Hb_008579_010 Hb_001565_050--Hb_001514_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0140943 0.509394 0.064685 0.0415482 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0252665 0 0 0

CAGE analysis