Hb_000413_190

Information

Type -
Description -
Location Contig413: 157442-158120
Sequence    

Annotation

kegg
ID pxb:103956260
description oxygen-evolving enhancer protein 3-2, chloroplastic
nr
ID XP_009366538.1
description PREDICTED: oxygen-evolving enhancer protein 3-2, chloroplastic [Pyrus x bretschneideri]
swissprot
ID Q41932
description Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2
trembl
ID B9HYU5
description Oxygen-evolving enhancer protein 3-1 OS=Populus trichocarpa GN=POPTR_0011s03390g PE=4 SV=1
Gene Ontology
ID GO:0009535
description oxygen-evolving enhancer protein 3- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40935: 157266-158113 , PASA_asmbl_40936: 157023-157773 , PASA_asmbl_40937: 158545-158706
cDNA
(Sanger)
(ID:Location)		 028_K15.ab1: 157266-158105

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000413_190 0.0 - - PREDICTED: oxygen-evolving enhancer protein 3-2, chloroplastic [Pyrus x bretschneideri]
2 Hb_004117_380 0.0933837448 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 14 [Jatropha curcas]
3 Hb_000025_700 0.0987585848 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
4 Hb_005488_210 0.1031148095 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
5 Hb_000732_300 0.1079491207 - - PREDICTED: uncharacterized protein LOC105649465 isoform X2 [Jatropha curcas]
6 Hb_004346_050 0.1102287425 - - PREDICTED: ABC transporter G family member 22 [Jatropha curcas]
7 Hb_007007_100 0.1102498748 - - PREDICTED: subtilisin-like protease SBT1.1 [Jatropha curcas]
8 Hb_179129_010 0.1118661182 - - hypothetical protein POPTR_0018s10470g [Populus trichocarpa]
9 Hb_016371_010 0.1133751729 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
10 Hb_005890_010 0.1138705741 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
11 Hb_000007_330 0.1146824948 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
12 Hb_003038_230 0.1150207454 - - PREDICTED: mannan endo-1,4-beta-mannosidase 7 [Jatropha curcas]
13 Hb_060534_010 0.1151433919 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
14 Hb_001369_340 0.115508607 - - Peroxisomal membrane protein 11B [Theobroma cacao]
15 Hb_000413_050 0.1155855206 - - PREDICTED: transcription factor bHLH112 isoform X2 [Jatropha curcas]
16 Hb_000343_050 0.1159362539 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000313_250 0.1185516834 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
18 Hb_001159_050 0.1243391878 - - PREDICTED: uncharacterized protein LOC105645952 [Jatropha curcas]
19 Hb_001424_010 0.1256003253 - - serine/threonine protein kinase, putative [Ricinus communis]
20 Hb_000890_170 0.1264234558 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000413_190 Hb_000413_190 Hb_004117_380 Hb_004117_380 Hb_000413_190--Hb_004117_380 Hb_000025_700 Hb_000025_700 Hb_000413_190--Hb_000025_700 Hb_005488_210 Hb_005488_210 Hb_000413_190--Hb_005488_210 Hb_000732_300 Hb_000732_300 Hb_000413_190--Hb_000732_300 Hb_004346_050 Hb_004346_050 Hb_000413_190--Hb_004346_050 Hb_007007_100 Hb_007007_100 Hb_000413_190--Hb_007007_100 Hb_001369_340 Hb_001369_340 Hb_004117_380--Hb_001369_340 Hb_004117_380--Hb_000025_700 Hb_003209_150 Hb_003209_150 Hb_004117_380--Hb_003209_150 Hb_004017_030 Hb_004017_030 Hb_004117_380--Hb_004017_030 Hb_004117_380--Hb_005488_210 Hb_005890_010 Hb_005890_010 Hb_004117_380--Hb_005890_010 Hb_078954_030 Hb_078954_030 Hb_000025_700--Hb_078954_030 Hb_001424_010 Hb_001424_010 Hb_000025_700--Hb_001424_010 Hb_179129_010 Hb_179129_010 Hb_000025_700--Hb_179129_010 Hb_000025_700--Hb_004346_050 Hb_000025_700--Hb_001369_340 Hb_016371_010 Hb_016371_010 Hb_000025_700--Hb_016371_010 Hb_000007_330 Hb_000007_330 Hb_005488_210--Hb_000007_330 Hb_005488_210--Hb_007007_100 Hb_000413_050 Hb_000413_050 Hb_005488_210--Hb_000413_050 Hb_005488_210--Hb_005890_010 Hb_000236_130 Hb_000236_130 Hb_005488_210--Hb_000236_130 Hb_005488_210--Hb_004346_050 Hb_003654_020 Hb_003654_020 Hb_000732_300--Hb_003654_020 Hb_000732_300--Hb_004117_380 Hb_000732_300--Hb_003209_150 Hb_002284_160 Hb_002284_160 Hb_000732_300--Hb_002284_160 Hb_000732_300--Hb_005890_010 Hb_004346_050--Hb_179129_010 Hb_004346_050--Hb_016371_010 Hb_004346_050--Hb_078954_030 Hb_004346_050--Hb_001424_010 Hb_048141_050 Hb_048141_050 Hb_004346_050--Hb_048141_050 Hb_007007_100--Hb_000007_330 Hb_000890_170 Hb_000890_170 Hb_007007_100--Hb_000890_170 Hb_000313_250 Hb_000313_250 Hb_007007_100--Hb_000313_250 Hb_007007_100--Hb_000236_130 Hb_006620_030 Hb_006620_030 Hb_007007_100--Hb_006620_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.187373 2.48601 11.2992 3.84094 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.174958 0 0 8.43752

CAGE analysis