Hb_000373_190

Information

Type -
Description -
Location Contig373: 244948-245473
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38132: 242219-244307
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000373_190 0.0 - - -
2 Hb_000670_030 0.260340885 - - -
3 Hb_002151_090 0.2742876494 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 1-like isoform X2 [Jatropha curcas]
4 Hb_045370_010 0.2761168132 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000173_380 0.280861527 transcription factor TF Family: FAR1 -
6 Hb_000086_100 0.2897023671 - - hypothetical protein POPTR_0005s24730g [Populus trichocarpa]
7 Hb_130323_010 0.2916304899 - - Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]
8 Hb_001148_020 0.2918348934 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
9 Hb_000025_070 0.2960790634 - - Uncharacterized protein TCM_040985 [Theobroma cacao]
10 Hb_000703_110 0.2970381991 - - -
11 Hb_000300_320 0.3080743268 - - PREDICTED: uncharacterized protein LOC105632583 [Jatropha curcas]
12 Hb_002027_020 0.3145156047 - - PREDICTED: uncharacterized protein LOC105650039 [Jatropha curcas]
13 Hb_079733_010 0.3152983862 - - -
14 Hb_012753_020 0.321768218 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003376_080 0.3253007065 - - PREDICTED: uncharacterized protein LOC105642190 isoform X1 [Jatropha curcas]
16 Hb_000245_080 0.3260089542 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-15 [Jatropha curcas]
17 Hb_001493_010 0.3262655151 - - triacylglycerol acidic lipase TAL4 [Ricinus communis]
18 Hb_006483_010 0.327206413 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
19 Hb_002431_020 0.3278706915 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
20 Hb_008864_040 0.3296859305 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15980 [Jatropha curcas]

Gene co-expression network

sample Hb_000373_190 Hb_000373_190 Hb_000670_030 Hb_000670_030 Hb_000373_190--Hb_000670_030 Hb_002151_090 Hb_002151_090 Hb_000373_190--Hb_002151_090 Hb_045370_010 Hb_045370_010 Hb_000373_190--Hb_045370_010 Hb_000173_380 Hb_000173_380 Hb_000373_190--Hb_000173_380 Hb_000086_100 Hb_000086_100 Hb_000373_190--Hb_000086_100 Hb_130323_010 Hb_130323_010 Hb_000373_190--Hb_130323_010 Hb_027428_030 Hb_027428_030 Hb_000670_030--Hb_027428_030 Hb_030619_010 Hb_030619_010 Hb_000670_030--Hb_030619_010 Hb_021576_060 Hb_021576_060 Hb_000670_030--Hb_021576_060 Hb_000275_040 Hb_000275_040 Hb_000670_030--Hb_000275_040 Hb_000253_030 Hb_000253_030 Hb_000670_030--Hb_000253_030 Hb_001135_020 Hb_001135_020 Hb_002151_090--Hb_001135_020 Hb_000060_040 Hb_000060_040 Hb_002151_090--Hb_000060_040 Hb_002235_210 Hb_002235_210 Hb_002151_090--Hb_002235_210 Hb_006916_040 Hb_006916_040 Hb_002151_090--Hb_006916_040 Hb_000313_300 Hb_000313_300 Hb_002151_090--Hb_000313_300 Hb_141532_010 Hb_141532_010 Hb_002151_090--Hb_141532_010 Hb_007547_050 Hb_007547_050 Hb_045370_010--Hb_007547_050 Hb_003125_140 Hb_003125_140 Hb_045370_010--Hb_003125_140 Hb_004097_020 Hb_004097_020 Hb_045370_010--Hb_004097_020 Hb_002483_020 Hb_002483_020 Hb_045370_010--Hb_002483_020 Hb_140595_010 Hb_140595_010 Hb_045370_010--Hb_140595_010 Hb_005608_010 Hb_005608_010 Hb_045370_010--Hb_005608_010 Hb_002002_020 Hb_002002_020 Hb_000173_380--Hb_002002_020 Hb_000077_080 Hb_000077_080 Hb_000173_380--Hb_000077_080 Hb_002400_070 Hb_002400_070 Hb_000173_380--Hb_002400_070 Hb_000237_230 Hb_000237_230 Hb_000173_380--Hb_000237_230 Hb_002843_100 Hb_002843_100 Hb_000173_380--Hb_002843_100 Hb_000186_040 Hb_000186_040 Hb_000173_380--Hb_000186_040 Hb_001351_080 Hb_001351_080 Hb_000086_100--Hb_001351_080 Hb_010831_020 Hb_010831_020 Hb_000086_100--Hb_010831_020 Hb_000886_060 Hb_000886_060 Hb_000086_100--Hb_000886_060 Hb_001691_150 Hb_001691_150 Hb_000086_100--Hb_001691_150 Hb_003038_220 Hb_003038_220 Hb_000086_100--Hb_003038_220 Hb_001493_010 Hb_001493_010 Hb_000086_100--Hb_001493_010 Hb_009485_020 Hb_009485_020 Hb_130323_010--Hb_009485_020 Hb_000544_180 Hb_000544_180 Hb_130323_010--Hb_000544_180 Hb_003858_040 Hb_003858_040 Hb_130323_010--Hb_003858_040 Hb_000300_320 Hb_000300_320 Hb_130323_010--Hb_000300_320 Hb_001396_280 Hb_001396_280 Hb_130323_010--Hb_001396_280 Hb_000983_170 Hb_000983_170 Hb_130323_010--Hb_000983_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.483115 0.398447 0 0.77455 0.839189 0.135411
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.342403 0.269503 0 0.124271 0

CAGE analysis