Hb_000186_040

Information

Type -
Description -
Location Contig186: 78771-85679
Sequence    

Annotation

kegg
ID rcu:RCOM_0903100
description hypothetical protein
nr
ID XP_002518412.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FIQ5
description Protein TORNADO 2 OS=Arabidopsis thaliana GN=TRN2 PE=1 SV=1
trembl
ID B9RXE3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0903100 PE=4 SV=1
Gene Ontology
ID GO:0005886
description protein tornado 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18225: 78915-81611 , PASA_asmbl_18226: 84121-85662
cDNA
(Sanger)
(ID:Location)		 049_K02.ab1: 81375-81611

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000186_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002270_010 0.1074452137 - - Chaperone protein dnaJ, putative [Ricinus communis]
3 Hb_001975_070 0.1079073308 - - eukaryotic translation elongation factor 1B alpha-subunit [Hevea brasiliensis]
4 Hb_011930_010 0.1095128954 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
5 Hb_005147_110 0.1128592441 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
6 Hb_000076_290 0.1132535211 - - translation factor sui1, putative [Ricinus communis]
7 Hb_001341_030 0.1133577505 transcription factor TF Family: LOB LOB domain-containing protein 1 [Theobroma cacao]
8 Hb_005144_040 0.1181149687 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
9 Hb_015401_020 0.1190920275 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
10 Hb_001439_180 0.1217535623 - - hypothetical protein POPTR_0004s13090g [Populus trichocarpa]
11 Hb_024399_010 0.1222278202 - - PREDICTED: uncharacterized protein LOC105649031 [Jatropha curcas]
12 Hb_000029_160 0.1244289842 - - Nitrilase, putative [Ricinus communis]
13 Hb_005725_070 0.1274936842 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001498_030 0.1280680755 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
15 Hb_042083_070 0.1290605082 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
16 Hb_003428_110 0.1293329998 - - ARF2-B: ADP-ribosylation factor 2-B [Gossypium arboreum]
17 Hb_002960_060 0.1302305895 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 28 [Jatropha curcas]
18 Hb_000640_210 0.1313743166 - - hypothetical protein JCGZ_14045 [Jatropha curcas]
19 Hb_002169_010 0.1317008703 - - PREDICTED: la-related protein 6B [Jatropha curcas]
20 Hb_000953_140 0.1333125325 transcription factor TF Family: Trihelix Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_000186_040 Hb_000186_040 Hb_002270_010 Hb_002270_010 Hb_000186_040--Hb_002270_010 Hb_001975_070 Hb_001975_070 Hb_000186_040--Hb_001975_070 Hb_011930_010 Hb_011930_010 Hb_000186_040--Hb_011930_010 Hb_005147_110 Hb_005147_110 Hb_000186_040--Hb_005147_110 Hb_000076_290 Hb_000076_290 Hb_000186_040--Hb_000076_290 Hb_001341_030 Hb_001341_030 Hb_000186_040--Hb_001341_030 Hb_005144_040 Hb_005144_040 Hb_002270_010--Hb_005144_040 Hb_002270_010--Hb_000076_290 Hb_000172_550 Hb_000172_550 Hb_002270_010--Hb_000172_550 Hb_000735_120 Hb_000735_120 Hb_002270_010--Hb_000735_120 Hb_001439_180 Hb_001439_180 Hb_002270_010--Hb_001439_180 Hb_015401_020 Hb_015401_020 Hb_002270_010--Hb_015401_020 Hb_001975_070--Hb_005147_110 Hb_001009_050 Hb_001009_050 Hb_001975_070--Hb_001009_050 Hb_000029_160 Hb_000029_160 Hb_001975_070--Hb_000029_160 Hb_002960_060 Hb_002960_060 Hb_001975_070--Hb_002960_060 Hb_001975_070--Hb_001341_030 Hb_000373_270 Hb_000373_270 Hb_001975_070--Hb_000373_270 Hb_011930_010--Hb_005147_110 Hb_024399_010 Hb_024399_010 Hb_011930_010--Hb_024399_010 Hb_011609_030 Hb_011609_030 Hb_011930_010--Hb_011609_030 Hb_160818_010 Hb_160818_010 Hb_011930_010--Hb_160818_010 Hb_000714_020 Hb_000714_020 Hb_011930_010--Hb_000714_020 Hb_005333_020 Hb_005333_020 Hb_011930_010--Hb_005333_020 Hb_008725_250 Hb_008725_250 Hb_005147_110--Hb_008725_250 Hb_004310_060 Hb_004310_060 Hb_005147_110--Hb_004310_060 Hb_005147_110--Hb_001341_030 Hb_005914_230 Hb_005914_230 Hb_005147_110--Hb_005914_230 Hb_018663_020 Hb_018663_020 Hb_005147_110--Hb_018663_020 Hb_005147_110--Hb_000373_270 Hb_000174_200 Hb_000174_200 Hb_000076_290--Hb_000174_200 Hb_004032_350 Hb_004032_350 Hb_000076_290--Hb_004032_350 Hb_000640_210 Hb_000640_210 Hb_000076_290--Hb_000640_210 Hb_000076_290--Hb_001439_180 Hb_000076_290--Hb_015401_020 Hb_001341_030--Hb_000373_270 Hb_001341_030--Hb_004310_060 Hb_001341_030--Hb_018663_020 Hb_001969_040 Hb_001969_040 Hb_001341_030--Hb_001969_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
178.544 57.5183 8.41986 29.1557 101.238 106.508
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.4656 43.5755 55.8004 41.0449 0.77312

CAGE analysis