Hb_000344_060

Information

Type -
Description -
Location Contig344: 138924-143595
Sequence    

Annotation

kegg
ID tcc:TCM_028027
description DNA/RNA polymerases superfamily protein
nr
ID XP_012068505.1
description PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID M1AL36
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009723 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000344_060 0.0 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
2 Hb_088144_010 0.2392821648 - - cellulose synthase, putative [Ricinus communis]
3 Hb_000206_220 0.2670468591 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 9 [Jatropha curcas]
4 Hb_000720_180 0.2807992552 - - -
5 Hb_019516_040 0.2877031172 desease resistance Gene Name: AAA Katanin p60 ATPase-containing subunit, putative [Ricinus communis]
6 Hb_032006_010 0.2877676854 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
7 Hb_002243_080 0.2893342758 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Vitis vinifera]
8 Hb_000784_130 0.2899232486 - - hypothetical protein JCGZ_22813 [Jatropha curcas]
9 Hb_000753_260 0.2934139267 transcription factor TF Family: MIKC MADS-box transcription factor 3 [Hevea brasiliensis]
10 Hb_000065_070 0.2940311298 - - hypothetical protein CISIN_1g039077mg [Citrus sinensis]
11 Hb_001631_070 0.2963273138 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
12 Hb_004787_090 0.2990240035 - - PREDICTED: HVA22-like protein a [Jatropha curcas]
13 Hb_094437_070 0.3014130424 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]
14 Hb_000762_020 0.3016513204 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
15 Hb_002924_050 0.303668916 - - PREDICTED: uncharacterized protein LOC105629366 [Jatropha curcas]
16 Hb_000613_200 0.3052299347 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase acetyl-CoA C-acetyltransferase [Hevea brasiliensis]
17 Hb_003745_010 0.3072621271 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
18 Hb_029879_080 0.3074056596 - - unknown [Populus trichocarpa]
19 Hb_114893_020 0.3079186845 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_010578_090 0.3079784489 - - HEV2.1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000344_060 Hb_000344_060 Hb_088144_010 Hb_088144_010 Hb_000344_060--Hb_088144_010 Hb_000206_220 Hb_000206_220 Hb_000344_060--Hb_000206_220 Hb_000720_180 Hb_000720_180 Hb_000344_060--Hb_000720_180 Hb_019516_040 Hb_019516_040 Hb_000344_060--Hb_019516_040 Hb_032006_010 Hb_032006_010 Hb_000344_060--Hb_032006_010 Hb_002243_080 Hb_002243_080 Hb_000344_060--Hb_002243_080 Hb_088144_010--Hb_002243_080 Hb_088144_010--Hb_000720_180 Hb_000707_080 Hb_000707_080 Hb_088144_010--Hb_000707_080 Hb_001631_070 Hb_001631_070 Hb_088144_010--Hb_001631_070 Hb_000548_040 Hb_000548_040 Hb_088144_010--Hb_000548_040 Hb_003540_230 Hb_003540_230 Hb_000206_220--Hb_003540_230 Hb_048141_010 Hb_048141_010 Hb_000206_220--Hb_048141_010 Hb_010578_090 Hb_010578_090 Hb_000206_220--Hb_010578_090 Hb_055259_010 Hb_055259_010 Hb_000206_220--Hb_055259_010 Hb_005016_130 Hb_005016_130 Hb_000206_220--Hb_005016_130 Hb_060668_010 Hb_060668_010 Hb_000206_220--Hb_060668_010 Hb_003018_180 Hb_003018_180 Hb_000720_180--Hb_003018_180 Hb_004545_150 Hb_004545_150 Hb_000720_180--Hb_004545_150 Hb_029879_080 Hb_029879_080 Hb_000720_180--Hb_029879_080 Hb_000720_180--Hb_001631_070 Hb_002301_020 Hb_002301_020 Hb_000720_180--Hb_002301_020 Hb_003745_010 Hb_003745_010 Hb_000720_180--Hb_003745_010 Hb_000997_260 Hb_000997_260 Hb_019516_040--Hb_000997_260 Hb_000510_100 Hb_000510_100 Hb_019516_040--Hb_000510_100 Hb_000762_020 Hb_000762_020 Hb_019516_040--Hb_000762_020 Hb_019516_040--Hb_003745_010 Hb_001140_160 Hb_001140_160 Hb_019516_040--Hb_001140_160 Hb_000920_140 Hb_000920_140 Hb_019516_040--Hb_000920_140 Hb_072912_010 Hb_072912_010 Hb_032006_010--Hb_072912_010 Hb_004884_060 Hb_004884_060 Hb_032006_010--Hb_004884_060 Hb_032006_010--Hb_004545_150 Hb_001102_110 Hb_001102_110 Hb_032006_010--Hb_001102_110 Hb_005470_010 Hb_005470_010 Hb_032006_010--Hb_005470_010 Hb_003906_110 Hb_003906_110 Hb_032006_010--Hb_003906_110 Hb_075449_050 Hb_075449_050 Hb_002243_080--Hb_075449_050 Hb_004705_030 Hb_004705_030 Hb_002243_080--Hb_004705_030 Hb_002243_080--Hb_000548_040 Hb_002243_080--Hb_001631_070 Hb_027892_010 Hb_027892_010 Hb_002243_080--Hb_027892_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.10442 0 0.0237204 0 0.0875681 0.0887507
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.273575 0 0.0971868 0.0217746 0

CAGE analysis