Hb_002243_080

Information

Type desease resistance
Description Gene Name: TIR
Location Contig2243: 121077-127071
Sequence    

Annotation

kegg
ID vvi:104882770
description TMV resistance protein N-like
nr
ID XP_010665434.1
description PREDICTED: TMV resistance protein N-like [Vitis vinifera]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID B9SBW2
description TMV resistance protein N, putative OS=Ricinus communis GN=RCOM_1045320 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002243_080 0.0 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Vitis vinifera]
2 Hb_075449_050 0.16791955 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
3 Hb_088144_010 0.1785844141 - - cellulose synthase, putative [Ricinus communis]
4 Hb_004705_030 0.1826428841 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000548_040 0.1870207966 rubber biosynthesis Gene Name: CPT1 cis-prenyltransferase1 [Hevea brasiliensis]
6 Hb_001631_070 0.1990214133 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
7 Hb_027892_010 0.2047772474 transcription factor TF Family: bHLH LMYC1 [Hevea brasiliensis]
8 Hb_002000_110 0.2072973705 - - ASR-like protein 2 [Hevea brasiliensis]
9 Hb_000249_090 0.2154833781 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
10 Hb_000002_390 0.2235466391 - - DNA binding protein, putative [Ricinus communis]
11 Hb_006018_030 0.2279921061 - - PREDICTED: uncharacterized protein LOC105108875 isoform X1 [Populus euphratica]
12 Hb_012347_010 0.2288344378 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
13 Hb_000720_180 0.2323861821 - - -
14 Hb_000120_650 0.2351041529 - - PREDICTED: proton-coupled amino acid transporter 3 [Jatropha curcas]
15 Hb_000107_070 0.237576964 - - PREDICTED: uncharacterized protein LOC105641007 [Jatropha curcas]
16 Hb_010872_060 0.2408738186 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
17 Hb_002235_230 0.2413705235 - - latex abundant protein 1 [Hevea brasiliensis]
18 Hb_000206_220 0.2414090075 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 9 [Jatropha curcas]
19 Hb_003745_010 0.2417318228 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
20 Hb_003540_230 0.2419846455 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002243_080 Hb_002243_080 Hb_075449_050 Hb_075449_050 Hb_002243_080--Hb_075449_050 Hb_088144_010 Hb_088144_010 Hb_002243_080--Hb_088144_010 Hb_004705_030 Hb_004705_030 Hb_002243_080--Hb_004705_030 Hb_000548_040 Hb_000548_040 Hb_002243_080--Hb_000548_040 Hb_001631_070 Hb_001631_070 Hb_002243_080--Hb_001631_070 Hb_027892_010 Hb_027892_010 Hb_002243_080--Hb_027892_010 Hb_002000_110 Hb_002000_110 Hb_075449_050--Hb_002000_110 Hb_000107_070 Hb_000107_070 Hb_075449_050--Hb_000107_070 Hb_006018_030 Hb_006018_030 Hb_075449_050--Hb_006018_030 Hb_002235_230 Hb_002235_230 Hb_075449_050--Hb_002235_230 Hb_023214_010 Hb_023214_010 Hb_075449_050--Hb_023214_010 Hb_001741_090 Hb_001741_090 Hb_075449_050--Hb_001741_090 Hb_000720_180 Hb_000720_180 Hb_088144_010--Hb_000720_180 Hb_000344_060 Hb_000344_060 Hb_088144_010--Hb_000344_060 Hb_000707_080 Hb_000707_080 Hb_088144_010--Hb_000707_080 Hb_088144_010--Hb_001631_070 Hb_088144_010--Hb_000548_040 Hb_004705_030--Hb_027892_010 Hb_000249_090 Hb_000249_090 Hb_004705_030--Hb_000249_090 Hb_004705_030--Hb_000548_040 Hb_012725_110 Hb_012725_110 Hb_004705_030--Hb_012725_110 Hb_000699_120 Hb_000699_120 Hb_004705_030--Hb_000699_120 Hb_004705_030--Hb_075449_050 Hb_000002_390 Hb_000002_390 Hb_000548_040--Hb_000002_390 Hb_001425_120 Hb_001425_120 Hb_000548_040--Hb_001425_120 Hb_002027_300 Hb_002027_300 Hb_000548_040--Hb_002027_300 Hb_012347_010 Hb_012347_010 Hb_000548_040--Hb_012347_010 Hb_000957_040 Hb_000957_040 Hb_000548_040--Hb_000957_040 Hb_000548_040--Hb_000707_080 Hb_010872_060 Hb_010872_060 Hb_001631_070--Hb_010872_060 Hb_001631_070--Hb_000957_040 Hb_000762_020 Hb_000762_020 Hb_001631_070--Hb_000762_020 Hb_001631_070--Hb_012347_010 Hb_124315_040 Hb_124315_040 Hb_001631_070--Hb_124315_040 Hb_003745_010 Hb_003745_010 Hb_001631_070--Hb_003745_010 Hb_027892_010--Hb_000249_090 Hb_000120_650 Hb_000120_650 Hb_027892_010--Hb_000120_650 Hb_000120_120 Hb_000120_120 Hb_027892_010--Hb_000120_120 Hb_000249_130 Hb_000249_130 Hb_027892_010--Hb_000249_130 Hb_013818_060 Hb_013818_060 Hb_027892_010--Hb_013818_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.34287 0.0227962 0 0 0.209995 0.473331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.09281 0.188214 1.5969 0.0559973 0

CAGE analysis