Hb_112356_040

Information

Type -
Description -
Location Contig112356: 15578-18573
Sequence    

Annotation

kegg
ID mdm:103422444
description G-type lectin S-receptor-like serine/threonine-protein kinase RKS1
nr
ID XP_012084625.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
swissprot
ID Q9ZT07
description G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 OS=Arabidopsis thaliana GN=RKS1 PE=3 SV=3
trembl
ID A0A067K6D5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20198 PE=4 SV=1
Gene Ontology
ID GO:0004672
description s-locus-specific glycoprotein s13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03783: 15744-16709
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_112356_040 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
2 Hb_000777_030 0.1284611389 - - histone h2a, putative [Ricinus communis]
3 Hb_006949_050 0.1432925429 - - unknown [Lotus japonicus]
4 Hb_022461_010 0.1477960371 - - -
5 Hb_005260_020 0.1534254298 - - PREDICTED: uncharacterized protein LOC105633789 [Jatropha curcas]
6 Hb_000575_150 0.1544884151 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
7 Hb_001477_130 0.1549622202 - - PREDICTED: uncharacterized protein LOC105646871 [Jatropha curcas]
8 Hb_000196_070 0.1591880088 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH80-like [Jatropha curcas]
9 Hb_006949_040 0.1593967409 - - protein phosphatase 2c, putative [Ricinus communis]
10 Hb_000953_020 0.1601062915 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
11 Hb_001048_020 0.1652131822 - - PREDICTED: E3 ubiquitin-protein ligase FANCL isoform X1 [Jatropha curcas]
12 Hb_000571_120 0.1659058948 - - importin beta-1, putative [Ricinus communis]
13 Hb_000768_040 0.1677682113 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
14 Hb_142898_010 0.1692941162 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001635_080 0.1706350133 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
16 Hb_000173_340 0.171356934 - - hypothetical protein JCGZ_02075 [Jatropha curcas]
17 Hb_005916_030 0.1721200927 - - PREDICTED: uncharacterized protein At2g29880-like [Jatropha curcas]
18 Hb_000156_130 0.1752616031 - - hypothetical protein JCGZ_04605 [Jatropha curcas]
19 Hb_001318_030 0.1761255157 - - PREDICTED: uncharacterized protein LOC105642686 [Jatropha curcas]
20 Hb_001817_160 0.177433902 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_112356_040 Hb_112356_040 Hb_000777_030 Hb_000777_030 Hb_112356_040--Hb_000777_030 Hb_006949_050 Hb_006949_050 Hb_112356_040--Hb_006949_050 Hb_022461_010 Hb_022461_010 Hb_112356_040--Hb_022461_010 Hb_005260_020 Hb_005260_020 Hb_112356_040--Hb_005260_020 Hb_000575_150 Hb_000575_150 Hb_112356_040--Hb_000575_150 Hb_001477_130 Hb_001477_130 Hb_112356_040--Hb_001477_130 Hb_000777_030--Hb_000575_150 Hb_000571_120 Hb_000571_120 Hb_000777_030--Hb_000571_120 Hb_004128_060 Hb_004128_060 Hb_000777_030--Hb_004128_060 Hb_001898_220 Hb_001898_220 Hb_000777_030--Hb_001898_220 Hb_000953_020 Hb_000953_020 Hb_000777_030--Hb_000953_020 Hb_000805_020 Hb_000805_020 Hb_000777_030--Hb_000805_020 Hb_006949_040 Hb_006949_040 Hb_006949_050--Hb_006949_040 Hb_000554_020 Hb_000554_020 Hb_006949_050--Hb_000554_020 Hb_000457_150 Hb_000457_150 Hb_006949_050--Hb_000457_150 Hb_001671_020 Hb_001671_020 Hb_006949_050--Hb_001671_020 Hb_000193_290 Hb_000193_290 Hb_006949_050--Hb_000193_290 Hb_004324_370 Hb_004324_370 Hb_006949_050--Hb_004324_370 Hb_001054_130 Hb_001054_130 Hb_022461_010--Hb_001054_130 Hb_011828_020 Hb_011828_020 Hb_022461_010--Hb_011828_020 Hb_022461_010--Hb_001477_130 Hb_003266_050 Hb_003266_050 Hb_022461_010--Hb_003266_050 Hb_002374_160 Hb_002374_160 Hb_022461_010--Hb_002374_160 Hb_001048_020 Hb_001048_020 Hb_022461_010--Hb_001048_020 Hb_001430_120 Hb_001430_120 Hb_005260_020--Hb_001430_120 Hb_005333_070 Hb_005333_070 Hb_005260_020--Hb_005333_070 Hb_027295_010 Hb_027295_010 Hb_005260_020--Hb_027295_010 Hb_000205_160 Hb_000205_160 Hb_005260_020--Hb_000205_160 Hb_001489_150 Hb_001489_150 Hb_005260_020--Hb_001489_150 Hb_001358_030 Hb_001358_030 Hb_005260_020--Hb_001358_030 Hb_000575_150--Hb_000805_020 Hb_001969_090 Hb_001969_090 Hb_000575_150--Hb_001969_090 Hb_007747_200 Hb_007747_200 Hb_000575_150--Hb_007747_200 Hb_004452_010 Hb_004452_010 Hb_000575_150--Hb_004452_010 Hb_010883_090 Hb_010883_090 Hb_000575_150--Hb_010883_090 Hb_004223_280 Hb_004223_280 Hb_001477_130--Hb_004223_280 Hb_002685_170 Hb_002685_170 Hb_001477_130--Hb_002685_170 Hb_002137_020 Hb_002137_020 Hb_001477_130--Hb_002137_020 Hb_001477_130--Hb_011828_020 Hb_000720_120 Hb_000720_120 Hb_001477_130--Hb_000720_120 Hb_005357_030 Hb_005357_030 Hb_001477_130--Hb_005357_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.206682 0.403432 0.183583 0.075367 0.118446 0.756368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.486121 0.494948 0.381488 0.179423 0.094422

CAGE analysis