Hb_075050_010

Information

Type -
Description -
Location Contig75050: 147-812
Sequence    

Annotation

kegg
ID rcu:RCOM_1704530
description leucine-rich repeat-containing protein, putative (EC:3.1.3.16)
nr
ID XP_002518243.1
description leucine-rich repeat-containing protein, putative [Ricinus communis]
swissprot
ID O64566
description Plant intracellular Ras-group-related LRR protein 6 OS=Arabidopsis thaliana GN=PIRL6 PE=2 SV=1
trembl
ID B9RWX4
description Leucine-rich repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1704530 PE=4 SV=1
Gene Ontology
ID GO:0005515
description plant intracellular ras-group-related lrr protein 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_075050_010 0.0 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
2 Hb_001856_240 0.0891037739 transcription factor TF Family: TCP Plastid transcription factor 1, putative isoform 1 [Theobroma cacao]
3 Hb_000482_030 0.0908385287 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like isoform X1 [Populus euphratica]
4 Hb_000012_370 0.0937320304 - - conserved hypothetical protein [Ricinus communis]
5 Hb_176135_010 0.097435657 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
6 Hb_003847_070 0.1019949211 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
7 Hb_000694_080 0.1023081129 - - phosphoribulose kinase, putative [Ricinus communis]
8 Hb_008748_050 0.102314156 - - PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Populus euphratica]
9 Hb_003090_050 0.1061635445 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
10 Hb_001269_480 0.1065176239 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Jatropha curcas]
11 Hb_007044_020 0.1067715904 - - unnamed protein product [Vitis vinifera]
12 Hb_002870_070 0.107055773 - - multidrug resistance pump, putative [Ricinus communis]
13 Hb_000221_130 0.1085663579 - - thylakoid lumenal 29 kDa protein, chloroplastic [Jatropha curcas]
14 Hb_003171_040 0.1095651036 - - multidrug resistance pump, putative [Ricinus communis]
15 Hb_000841_040 0.1101526807 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
16 Hb_000923_030 0.1104546751 - - F-box family protein [Populus trichocarpa]
17 Hb_011344_030 0.1115574903 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
18 Hb_008948_130 0.1146495332 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000185_010 0.1149671421 - - Alliin lyase precursor, putative [Ricinus communis]
20 Hb_000026_060 0.1149887598 - - beta-1,3-glucanase [Manihot esculenta]

Gene co-expression network

sample Hb_075050_010 Hb_075050_010 Hb_001856_240 Hb_001856_240 Hb_075050_010--Hb_001856_240 Hb_000482_030 Hb_000482_030 Hb_075050_010--Hb_000482_030 Hb_000012_370 Hb_000012_370 Hb_075050_010--Hb_000012_370 Hb_176135_010 Hb_176135_010 Hb_075050_010--Hb_176135_010 Hb_003847_070 Hb_003847_070 Hb_075050_010--Hb_003847_070 Hb_000694_080 Hb_000694_080 Hb_075050_010--Hb_000694_080 Hb_008748_050 Hb_008748_050 Hb_001856_240--Hb_008748_050 Hb_001856_240--Hb_176135_010 Hb_001856_240--Hb_003847_070 Hb_001856_240--Hb_000012_370 Hb_001006_160 Hb_001006_160 Hb_001856_240--Hb_001006_160 Hb_002870_070 Hb_002870_070 Hb_001856_240--Hb_002870_070 Hb_000482_030--Hb_000694_080 Hb_000017_210 Hb_000017_210 Hb_000482_030--Hb_000017_210 Hb_007426_070 Hb_007426_070 Hb_000482_030--Hb_007426_070 Hb_000841_040 Hb_000841_040 Hb_000482_030--Hb_000841_040 Hb_000111_460 Hb_000111_460 Hb_000482_030--Hb_000111_460 Hb_000482_030--Hb_008748_050 Hb_001191_060 Hb_001191_060 Hb_000012_370--Hb_001191_060 Hb_000012_370--Hb_176135_010 Hb_000012_370--Hb_008748_050 Hb_086022_020 Hb_086022_020 Hb_000012_370--Hb_086022_020 Hb_000185_010 Hb_000185_010 Hb_000012_370--Hb_000185_010 Hb_000320_370 Hb_000320_370 Hb_000012_370--Hb_000320_370 Hb_176135_010--Hb_008748_050 Hb_176135_010--Hb_086022_020 Hb_176135_010--Hb_003847_070 Hb_002785_040 Hb_002785_040 Hb_176135_010--Hb_002785_040 Hb_000251_160 Hb_000251_160 Hb_176135_010--Hb_000251_160 Hb_000083_180 Hb_000083_180 Hb_003847_070--Hb_000083_180 Hb_003020_120 Hb_003020_120 Hb_003847_070--Hb_003020_120 Hb_003847_070--Hb_008748_050 Hb_000221_130 Hb_000221_130 Hb_003847_070--Hb_000221_130 Hb_000694_080--Hb_000017_210 Hb_087599_010 Hb_087599_010 Hb_000694_080--Hb_087599_010 Hb_000694_080--Hb_007426_070 Hb_000483_440 Hb_000483_440 Hb_000694_080--Hb_000483_440 Hb_000694_080--Hb_000012_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0375143 0.0633207 1.97686 0.693442 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0682076 0 0.139077 5.22742

CAGE analysis