Hb_011942_070

Information

Type -
Description -
Location Contig11942: 33366-35426
Sequence    

Annotation

kegg
ID rcu:RCOM_1442850
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012067447.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g20230-like [Jatropha curcas]
swissprot
ID Q9LNU6
description Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
trembl
ID A0A067LBQ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26943 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05744: 35602-35728
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011942_070 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g20230-like [Jatropha curcas]
2 Hb_000676_010 0.1181009504 - - PREDICTED: pentatricopeptide repeat-containing protein At1g20230-like [Jatropha curcas]
3 Hb_000567_380 0.1227215958 - - ubiquitin specific protease 39 and snrnp assembly factor, putative [Ricinus communis]
4 Hb_002035_120 0.125499502 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14330 [Jatropha curcas]
5 Hb_000140_230 0.1341788464 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
6 Hb_000011_330 0.1429540047 - - fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
7 Hb_005228_070 0.1436545113 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial [Jatropha curcas]
8 Hb_080952_010 0.1442637232 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20770 [Jatropha curcas]
9 Hb_000417_310 0.144326414 - - uncharacterized protein LOC100272531 [Zea mays]
10 Hb_001141_390 0.1462384678 - - PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
11 Hb_046198_010 0.1463245882 - - PREDICTED: NADPH-dependent pterin aldehyde reductase [Jatropha curcas]
12 Hb_001946_410 0.1484777751 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
13 Hb_003020_050 0.149083325 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_050622_050 0.1523156693 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]
15 Hb_012325_020 0.1531128295 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
16 Hb_002316_150 0.1535558399 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
17 Hb_003938_190 0.1537556744 - - PREDICTED: pentatricopeptide repeat-containing protein At1g06145-like [Jatropha curcas]
18 Hb_000398_010 0.1543595989 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002205_190 0.1543809204 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
20 Hb_000335_020 0.1556227321 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_011942_070 Hb_011942_070 Hb_000676_010 Hb_000676_010 Hb_011942_070--Hb_000676_010 Hb_000567_380 Hb_000567_380 Hb_011942_070--Hb_000567_380 Hb_002035_120 Hb_002035_120 Hb_011942_070--Hb_002035_120 Hb_000140_230 Hb_000140_230 Hb_011942_070--Hb_000140_230 Hb_000011_330 Hb_000011_330 Hb_011942_070--Hb_000011_330 Hb_005228_070 Hb_005228_070 Hb_011942_070--Hb_005228_070 Hb_000676_010--Hb_002035_120 Hb_002110_150 Hb_002110_150 Hb_000676_010--Hb_002110_150 Hb_001247_250 Hb_001247_250 Hb_000676_010--Hb_001247_250 Hb_000676_010--Hb_000140_230 Hb_050622_050 Hb_050622_050 Hb_000676_010--Hb_050622_050 Hb_001818_070 Hb_001818_070 Hb_000676_010--Hb_001818_070 Hb_000567_380--Hb_000011_330 Hb_002205_190 Hb_002205_190 Hb_000567_380--Hb_002205_190 Hb_008695_140 Hb_008695_140 Hb_000567_380--Hb_008695_140 Hb_003976_030 Hb_003976_030 Hb_000567_380--Hb_003976_030 Hb_012325_020 Hb_012325_020 Hb_000567_380--Hb_012325_020 Hb_000567_380--Hb_050622_050 Hb_000201_100 Hb_000201_100 Hb_002035_120--Hb_000201_100 Hb_002035_120--Hb_001247_250 Hb_027295_050 Hb_027295_050 Hb_002035_120--Hb_027295_050 Hb_002725_120 Hb_002725_120 Hb_002035_120--Hb_002725_120 Hb_004374_070 Hb_004374_070 Hb_002035_120--Hb_004374_070 Hb_000264_320 Hb_000264_320 Hb_000140_230--Hb_000264_320 Hb_003020_050 Hb_003020_050 Hb_000140_230--Hb_003020_050 Hb_002316_150 Hb_002316_150 Hb_000140_230--Hb_002316_150 Hb_168697_010 Hb_168697_010 Hb_000140_230--Hb_168697_010 Hb_008775_040 Hb_008775_040 Hb_000140_230--Hb_008775_040 Hb_048219_010 Hb_048219_010 Hb_000140_230--Hb_048219_010 Hb_000011_330--Hb_002205_190 Hb_000011_330--Hb_003976_030 Hb_000092_010 Hb_000092_010 Hb_000011_330--Hb_000092_010 Hb_000723_130 Hb_000723_130 Hb_000011_330--Hb_000723_130 Hb_046198_010 Hb_046198_010 Hb_000011_330--Hb_046198_010 Hb_003938_190 Hb_003938_190 Hb_005228_070--Hb_003938_190 Hb_000039_160 Hb_000039_160 Hb_005228_070--Hb_000039_160 Hb_005228_070--Hb_012325_020 Hb_168319_030 Hb_168319_030 Hb_005228_070--Hb_168319_030 Hb_085863_030 Hb_085863_030 Hb_005228_070--Hb_085863_030 Hb_000063_140 Hb_000063_140 Hb_005228_070--Hb_000063_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.11745 1.76451 1.29418 0.279696 1.30821 1.11649
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.589404 1.168 3.42279 0.696828 0.980957

CAGE analysis