Hb_011129_040

Information

Type -
Description -
Location Contig11129: 56771-60026
Sequence    

Annotation

kegg
ID rcu:RCOM_1314180
description phosphatidylcholine transfer protein, putative
nr
ID XP_012086635.1
description PREDICTED: uncharacterized protein LOC105645602 [Jatropha curcas]
swissprot
ID Q9NQZ5
description StAR-related lipid transfer protein 7, mitochondrial OS=Homo sapiens GN=STARD7 PE=1 SV=2
trembl
ID A0A067JZ22
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20381 PE=4 SV=1
Gene Ontology
ID GO:0008289
description phosphatidylcholine transfer

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03457: 57270-60094
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011129_040 0.0 - - PREDICTED: uncharacterized protein LOC105645602 [Jatropha curcas]
2 Hb_002849_100 0.0745389935 - - PREDICTED: mechanosensitive ion channel protein 1, mitochondrial [Jatropha curcas]
3 Hb_003504_030 0.0796223586 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
4 Hb_000343_250 0.0831646634 - - PREDICTED: protein CASC3 [Jatropha curcas]
5 Hb_000037_190 0.0851097643 - - PREDICTED: uncharacterized protein LOC105641500 [Jatropha curcas]
6 Hb_000699_030 0.0856274619 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
7 Hb_021443_040 0.0866730795 - - acc synthase, putative [Ricinus communis]
8 Hb_002732_040 0.0871086793 - - PREDICTED: uncharacterized protein LOC105628163 isoform X1 [Jatropha curcas]
9 Hb_001004_060 0.0881509816 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
10 Hb_005489_020 0.089238113 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002843_120 0.0914333445 - - PREDICTED: uncharacterized protein LOC105645113 isoform X1 [Jatropha curcas]
12 Hb_000346_060 0.0917427869 - - hypothetical protein JCGZ_19590 [Jatropha curcas]
13 Hb_000327_270 0.093439771 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
14 Hb_005779_080 0.0949909584 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
15 Hb_003929_110 0.0962395382 - - PREDICTED: probable GTP diphosphokinase CRSH, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_188063_020 0.0973974939 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003747_100 0.097875779 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
18 Hb_000120_130 0.0980160767 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
19 Hb_002218_090 0.0980352235 - - Poly(rC)-binding protein, putative [Ricinus communis]
20 Hb_000331_680 0.0985724596 - - Protein bem46, putative [Ricinus communis]

Gene co-expression network

sample Hb_011129_040 Hb_011129_040 Hb_002849_100 Hb_002849_100 Hb_011129_040--Hb_002849_100 Hb_003504_030 Hb_003504_030 Hb_011129_040--Hb_003504_030 Hb_000343_250 Hb_000343_250 Hb_011129_040--Hb_000343_250 Hb_000037_190 Hb_000037_190 Hb_011129_040--Hb_000037_190 Hb_000699_030 Hb_000699_030 Hb_011129_040--Hb_000699_030 Hb_021443_040 Hb_021443_040 Hb_011129_040--Hb_021443_040 Hb_188063_020 Hb_188063_020 Hb_002849_100--Hb_188063_020 Hb_010710_070 Hb_010710_070 Hb_002849_100--Hb_010710_070 Hb_004963_030 Hb_004963_030 Hb_002849_100--Hb_004963_030 Hb_004225_050 Hb_004225_050 Hb_002849_100--Hb_004225_050 Hb_002849_100--Hb_000343_250 Hb_002496_010 Hb_002496_010 Hb_002849_100--Hb_002496_010 Hb_000327_270 Hb_000327_270 Hb_003504_030--Hb_000327_270 Hb_003504_030--Hb_000037_190 Hb_001799_180 Hb_001799_180 Hb_003504_030--Hb_001799_180 Hb_013399_100 Hb_013399_100 Hb_003504_030--Hb_013399_100 Hb_002732_040 Hb_002732_040 Hb_003504_030--Hb_002732_040 Hb_001409_020 Hb_001409_020 Hb_003504_030--Hb_001409_020 Hb_000343_250--Hb_002732_040 Hb_000462_060 Hb_000462_060 Hb_000343_250--Hb_000462_060 Hb_000200_380 Hb_000200_380 Hb_000343_250--Hb_000200_380 Hb_008406_200 Hb_008406_200 Hb_000343_250--Hb_008406_200 Hb_000346_060 Hb_000346_060 Hb_000343_250--Hb_000346_060 Hb_000343_250--Hb_004963_030 Hb_000037_190--Hb_002732_040 Hb_000174_270 Hb_000174_270 Hb_000037_190--Hb_000174_270 Hb_001329_140 Hb_001329_140 Hb_000037_190--Hb_001329_140 Hb_003168_110 Hb_003168_110 Hb_000037_190--Hb_003168_110 Hb_000866_460 Hb_000866_460 Hb_000037_190--Hb_000866_460 Hb_000708_030 Hb_000708_030 Hb_000699_030--Hb_000708_030 Hb_000699_030--Hb_000327_270 Hb_007007_120 Hb_007007_120 Hb_000699_030--Hb_007007_120 Hb_005116_160 Hb_005116_160 Hb_000699_030--Hb_005116_160 Hb_005489_020 Hb_005489_020 Hb_000699_030--Hb_005489_020 Hb_003680_120 Hb_003680_120 Hb_000699_030--Hb_003680_120 Hb_003929_110 Hb_003929_110 Hb_021443_040--Hb_003929_110 Hb_021443_040--Hb_005489_020 Hb_001004_060 Hb_001004_060 Hb_021443_040--Hb_001004_060 Hb_001123_260 Hb_001123_260 Hb_021443_040--Hb_001123_260 Hb_000329_370 Hb_000329_370 Hb_021443_040--Hb_000329_370 Hb_021443_040--Hb_000343_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.8599 32.251 24.9279 20.5776 22.4811 31.6126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.5717 16.723 34.1352 16.651 39.7507

CAGE analysis