Hb_006487_070

Information

Type -
Description -
Location Contig6487: 58362-65859
Sequence    

Annotation

kegg
ID pop:POPTR_0001s00940g
description hypothetical protein
nr
ID XP_012083874.1
description PREDICTED: rop guanine nucleotide exchange factor 14 [Jatropha curcas]
swissprot
ID Q56WM6
description Rop guanine nucleotide exchange factor 14 OS=Arabidopsis thaliana GN=ROPGEF14 PE=1 SV=1
trembl
ID A0A067K8B1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19467 PE=4 SV=1
Gene Ontology
ID GO:0005089
description rop guanine nucleotide exchange factor 14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52464: 58293-60589
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006487_070 0.0 - - PREDICTED: rop guanine nucleotide exchange factor 14 [Jatropha curcas]
2 Hb_000025_210 0.1518296924 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Jatropha curcas]
3 Hb_015057_060 0.1530861517 - - -
4 Hb_000836_450 0.1545838167 - - PREDICTED: 3-methyl-2-oxobutanoate hydroxymethyltransferase 1, mitochondrial-like [Jatropha curcas]
5 Hb_004195_270 0.1601998668 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
6 Hb_002234_060 0.1645208831 - - F-box protein, atfbl3, putative [Ricinus communis]
7 Hb_048476_110 0.1646620621 - - PREDICTED: adagio protein 3 [Jatropha curcas]
8 Hb_000046_100 0.1649841087 - - NADH dehydrogenase, putative [Ricinus communis]
9 Hb_000733_070 0.1671250817 - - PREDICTED: rop guanine nucleotide exchange factor 5 [Jatropha curcas]
10 Hb_001277_070 0.1712804058 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
11 Hb_002183_070 0.1715228263 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Jatropha curcas]
12 Hb_000421_180 0.1717797773 - - ATP binding protein, putative [Ricinus communis]
13 Hb_011224_110 0.1726342051 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
14 Hb_000575_030 0.1726474614 - - unnamed protein product [Vitis vinifera]
15 Hb_002490_020 0.1731332903 - - peptidyl-tRNA hydrolase family protein [Populus trichocarpa]
16 Hb_001960_040 0.1754278133 - - PREDICTED: CTP synthase [Jatropha curcas]
17 Hb_001268_420 0.1768076729 - - PREDICTED: uncharacterized protein LOC105630158 [Jatropha curcas]
18 Hb_071947_010 0.1787233141 - - -
19 Hb_003732_020 0.1792655716 - - PREDICTED: phosphoglucomutase, chloroplastic-like [Populus euphratica]
20 Hb_001983_020 0.179266617 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]

Gene co-expression network

sample Hb_006487_070 Hb_006487_070 Hb_000025_210 Hb_000025_210 Hb_006487_070--Hb_000025_210 Hb_015057_060 Hb_015057_060 Hb_006487_070--Hb_015057_060 Hb_000836_450 Hb_000836_450 Hb_006487_070--Hb_000836_450 Hb_004195_270 Hb_004195_270 Hb_006487_070--Hb_004195_270 Hb_002234_060 Hb_002234_060 Hb_006487_070--Hb_002234_060 Hb_048476_110 Hb_048476_110 Hb_006487_070--Hb_048476_110 Hb_000025_210--Hb_048476_110 Hb_003734_060 Hb_003734_060 Hb_000025_210--Hb_003734_060 Hb_002183_070 Hb_002183_070 Hb_000025_210--Hb_002183_070 Hb_034482_020 Hb_034482_020 Hb_000025_210--Hb_034482_020 Hb_000059_360 Hb_000059_360 Hb_000025_210--Hb_000059_360 Hb_000046_100 Hb_000046_100 Hb_000025_210--Hb_000046_100 Hb_005433_040 Hb_005433_040 Hb_015057_060--Hb_005433_040 Hb_015057_060--Hb_000046_100 Hb_035273_030 Hb_035273_030 Hb_015057_060--Hb_035273_030 Hb_007432_030 Hb_007432_030 Hb_015057_060--Hb_007432_030 Hb_019516_080 Hb_019516_080 Hb_015057_060--Hb_019516_080 Hb_007924_020 Hb_007924_020 Hb_015057_060--Hb_007924_020 Hb_002799_110 Hb_002799_110 Hb_000836_450--Hb_002799_110 Hb_003086_150 Hb_003086_150 Hb_000836_450--Hb_003086_150 Hb_001218_040 Hb_001218_040 Hb_000836_450--Hb_001218_040 Hb_000340_570 Hb_000340_570 Hb_000836_450--Hb_000340_570 Hb_000836_450--Hb_000059_360 Hb_000205_090 Hb_000205_090 Hb_000836_450--Hb_000205_090 Hb_010222_020 Hb_010222_020 Hb_004195_270--Hb_010222_020 Hb_004195_270--Hb_000205_090 Hb_118419_010 Hb_118419_010 Hb_004195_270--Hb_118419_010 Hb_000787_050 Hb_000787_050 Hb_004195_270--Hb_000787_050 Hb_002490_020 Hb_002490_020 Hb_004195_270--Hb_002490_020 Hb_001268_420 Hb_001268_420 Hb_004195_270--Hb_001268_420 Hb_181729_010 Hb_181729_010 Hb_002234_060--Hb_181729_010 Hb_000317_490 Hb_000317_490 Hb_002234_060--Hb_000317_490 Hb_002016_170 Hb_002016_170 Hb_002234_060--Hb_002016_170 Hb_002234_060--Hb_000836_450 Hb_002234_060--Hb_000025_210 Hb_004225_030 Hb_004225_030 Hb_002234_060--Hb_004225_030 Hb_048476_110--Hb_000059_360 Hb_003813_030 Hb_003813_030 Hb_048476_110--Hb_003813_030 Hb_000000_210 Hb_000000_210 Hb_048476_110--Hb_000000_210 Hb_007044_120 Hb_007044_120 Hb_048476_110--Hb_007044_120 Hb_001277_070 Hb_001277_070 Hb_048476_110--Hb_001277_070 Hb_000580_090 Hb_000580_090 Hb_048476_110--Hb_000580_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.8017 5.10838 18.3589 3.11118 12.1972 4.20572
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.0299 17.2713 26.0549 7.52887 12.6527

CAGE analysis