Hb_005993_030

Information

Type -
Description -
Location Contig5993: 36449-38729
Sequence    

Annotation

kegg
ID pop:POPTR_0005s23310g
description POPTRDRAFT_818667; putative senescence-associated protein SAG102
nr
ID XP_002307593.1
description putative senescence-associated protein SAG102 [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9H8A3
description Putative senescence-associated protein SAG102 OS=Populus trichocarpa GN=POPTR_0005s23310g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50520: 36450-38684
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005993_030 0.0 - - putative senescence-associated protein SAG102 [Populus trichocarpa]
2 Hb_000731_280 0.0917125486 - - PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
3 Hb_000866_040 0.1149469182 - - PREDICTED: cytochrome P450 86A8-like [Jatropha curcas]
4 Hb_002918_120 0.1150909788 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_003687_040 0.1154939271 - - PREDICTED: uncharacterized protein LOC105632153 [Jatropha curcas]
6 Hb_000941_010 0.1262066674 - - hypothetical protein RCOM_0504460 [Ricinus communis]
7 Hb_001195_740 0.1292078216 transcription factor TF Family: LIM PREDICTED: protein DA1 isoform X1 [Jatropha curcas]
8 Hb_002095_050 0.1293115422 - - PREDICTED: uncharacterized protein LOC104447479 [Eucalyptus grandis]
9 Hb_000567_060 0.1315399324 - - PREDICTED: U-box domain-containing protein 7 [Jatropha curcas]
10 Hb_137272_010 0.1345755819 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
11 Hb_001135_010 0.1395844877 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
12 Hb_004446_060 0.1437631917 - - neutral/alkaline invertase [Manihot esculenta]
13 Hb_001437_260 0.143990994 - - PREDICTED: protein FAM98B-like [Jatropha curcas]
14 Hb_000834_220 0.1455018337 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
15 Hb_002301_370 0.1501340877 - - hypothetical protein JCGZ_21454 [Jatropha curcas]
16 Hb_021346_020 0.1502008238 - - hypothetical protein JCGZ_26746 [Jatropha curcas]
17 Hb_001638_150 0.1507412925 - - acyltransferase, putative [Ricinus communis]
18 Hb_004306_130 0.1523558456 - - PREDICTED: uncharacterized protein LOC105644385 isoform X1 [Jatropha curcas]
19 Hb_001048_100 0.1524011216 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
20 Hb_000018_090 0.1531044294 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_005993_030 Hb_005993_030 Hb_000731_280 Hb_000731_280 Hb_005993_030--Hb_000731_280 Hb_000866_040 Hb_000866_040 Hb_005993_030--Hb_000866_040 Hb_002918_120 Hb_002918_120 Hb_005993_030--Hb_002918_120 Hb_003687_040 Hb_003687_040 Hb_005993_030--Hb_003687_040 Hb_000941_010 Hb_000941_010 Hb_005993_030--Hb_000941_010 Hb_001195_740 Hb_001195_740 Hb_005993_030--Hb_001195_740 Hb_000731_280--Hb_000941_010 Hb_000731_280--Hb_002918_120 Hb_004117_280 Hb_004117_280 Hb_000731_280--Hb_004117_280 Hb_000024_150 Hb_000024_150 Hb_000731_280--Hb_000024_150 Hb_001437_260 Hb_001437_260 Hb_000731_280--Hb_001437_260 Hb_004306_130 Hb_004306_130 Hb_000866_040--Hb_004306_130 Hb_001135_010 Hb_001135_010 Hb_000866_040--Hb_001135_010 Hb_000866_040--Hb_002918_120 Hb_004446_060 Hb_004446_060 Hb_000866_040--Hb_004446_060 Hb_001500_080 Hb_001500_080 Hb_000866_040--Hb_001500_080 Hb_002918_120--Hb_004446_060 Hb_002918_120--Hb_001195_740 Hb_000834_220 Hb_000834_220 Hb_002918_120--Hb_000834_220 Hb_005144_060 Hb_005144_060 Hb_002918_120--Hb_005144_060 Hb_002918_120--Hb_001437_260 Hb_021346_020 Hb_021346_020 Hb_002918_120--Hb_021346_020 Hb_000061_310 Hb_000061_310 Hb_003687_040--Hb_000061_310 Hb_001019_160 Hb_001019_160 Hb_003687_040--Hb_001019_160 Hb_031385_010 Hb_031385_010 Hb_003687_040--Hb_031385_010 Hb_001040_080 Hb_001040_080 Hb_003687_040--Hb_001040_080 Hb_000230_360 Hb_000230_360 Hb_003687_040--Hb_000230_360 Hb_002463_050 Hb_002463_050 Hb_003687_040--Hb_002463_050 Hb_000941_010--Hb_001437_260 Hb_001104_020 Hb_001104_020 Hb_000941_010--Hb_001104_020 Hb_000941_010--Hb_002918_120 Hb_000732_220 Hb_000732_220 Hb_000941_010--Hb_000732_220 Hb_000941_010--Hb_000024_150 Hb_001157_190 Hb_001157_190 Hb_001195_740--Hb_001157_190 Hb_008143_060 Hb_008143_060 Hb_001195_740--Hb_008143_060 Hb_001832_140 Hb_001832_140 Hb_001195_740--Hb_001832_140 Hb_000696_250 Hb_000696_250 Hb_001195_740--Hb_000696_250 Hb_000696_030 Hb_000696_030 Hb_001195_740--Hb_000696_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.28554 2.83308 11.4813 6.02629 0.0476984 0.566303
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0225309 0.0709118 0.0336191 5.56471 3.25965

CAGE analysis