Hb_004907_060

Information

Type -
Description -
Location Contig4907: 106735-109987
Sequence    

Annotation

kegg
ID cit:102629606
description tropinone reductase homolog At1g07440-like
nr
ID XP_012088655.1
description PREDICTED: tropinone reductase homolog At5g06060-like [Jatropha curcas]
swissprot
ID Q9LHT0
description Tropinone reductase homolog At5g06060 OS=Arabidopsis thaliana GN=At5g06060 PE=2 SV=1
trembl
ID A0A067LCC5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01393 PE=4 SV=1
Gene Ontology
ID GO:0005829
description tropinone reductase homolog at1g07440-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45290: 106855-110028
cDNA
(Sanger)
(ID:Location)		 033_I17.ab1: 106880-108724 , 038_A21.ab1: 106880-108864

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004907_060 0.0 - - PREDICTED: tropinone reductase homolog At5g06060-like [Jatropha curcas]
2 Hb_180074_010 0.1376543323 - - Single-stranded DNA-binding protein, mitochondrial precursor, putative [Ricinus communis]
3 Hb_003327_050 0.1420667147 - - surfeit locus protein, putative [Ricinus communis]
4 Hb_001240_020 0.1444190479 - - PREDICTED: uncharacterized protein LOC105641171 [Jatropha curcas]
5 Hb_003020_150 0.1470155778 - - tropinone reductase, putative [Ricinus communis]
6 Hb_015183_060 0.1477756017 - - hypothetical protein JCGZ_06621 [Jatropha curcas]
7 Hb_027380_180 0.1484497075 - - PREDICTED: putative hydrolase C777.06c [Jatropha curcas]
8 Hb_000384_120 0.1499196199 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
9 Hb_001979_020 0.1505913784 - - hypothetical protein OsJ_31823 [Oryza sativa Japonica Group]
10 Hb_000056_250 0.1524232582 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
11 Hb_000707_020 0.1530311096 - - hypothetical protein B456_002G255500 [Gossypium raimondii]
12 Hb_007037_020 0.1531727882 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
13 Hb_000896_040 0.154970775 - - BnaC02g13240D [Brassica napus]
14 Hb_005054_260 0.155603577 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A [Jatropha curcas]
15 Hb_086639_090 0.1557309043 - - 60S ribosomal protein L7a, putative [Ricinus communis]
16 Hb_001484_010 0.1558342605 - - hypothetical protein POPTR_0005s07440g [Populus trichocarpa]
17 Hb_003880_030 0.1561041646 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
18 Hb_000928_130 0.1561937225 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
19 Hb_000417_260 0.1571255991 - - protein with unknown function [Ricinus communis]
20 Hb_000563_190 0.1574153812 - - hypothetical protein PRUPE_ppa002828mg [Prunus persica]

Gene co-expression network

sample Hb_004907_060 Hb_004907_060 Hb_180074_010 Hb_180074_010 Hb_004907_060--Hb_180074_010 Hb_003327_050 Hb_003327_050 Hb_004907_060--Hb_003327_050 Hb_001240_020 Hb_001240_020 Hb_004907_060--Hb_001240_020 Hb_003020_150 Hb_003020_150 Hb_004907_060--Hb_003020_150 Hb_015183_060 Hb_015183_060 Hb_004907_060--Hb_015183_060 Hb_027380_180 Hb_027380_180 Hb_004907_060--Hb_027380_180 Hb_033642_080 Hb_033642_080 Hb_180074_010--Hb_033642_080 Hb_091433_020 Hb_091433_020 Hb_180074_010--Hb_091433_020 Hb_011671_440 Hb_011671_440 Hb_180074_010--Hb_011671_440 Hb_005391_030 Hb_005391_030 Hb_180074_010--Hb_005391_030 Hb_000896_040 Hb_000896_040 Hb_180074_010--Hb_000896_040 Hb_006478_150 Hb_006478_150 Hb_180074_010--Hb_006478_150 Hb_086639_090 Hb_086639_090 Hb_003327_050--Hb_086639_090 Hb_000441_110 Hb_000441_110 Hb_003327_050--Hb_000441_110 Hb_000028_100 Hb_000028_100 Hb_003327_050--Hb_000028_100 Hb_001369_170 Hb_001369_170 Hb_003327_050--Hb_001369_170 Hb_031718_010 Hb_031718_010 Hb_003327_050--Hb_031718_010 Hb_004453_020 Hb_004453_020 Hb_003327_050--Hb_004453_020 Hb_147752_010 Hb_147752_010 Hb_001240_020--Hb_147752_010 Hb_000302_290 Hb_000302_290 Hb_001240_020--Hb_000302_290 Hb_000061_130 Hb_000061_130 Hb_001240_020--Hb_000061_130 Hb_000445_490 Hb_000445_490 Hb_001240_020--Hb_000445_490 Hb_000928_130 Hb_000928_130 Hb_001240_020--Hb_000928_130 Hb_001085_270 Hb_001085_270 Hb_001240_020--Hb_001085_270 Hb_001979_020 Hb_001979_020 Hb_003020_150--Hb_001979_020 Hb_000163_050 Hb_000163_050 Hb_003020_150--Hb_000163_050 Hb_002232_060 Hb_002232_060 Hb_003020_150--Hb_002232_060 Hb_002016_080 Hb_002016_080 Hb_003020_150--Hb_002016_080 Hb_003880_030 Hb_003880_030 Hb_003020_150--Hb_003880_030 Hb_002260_010 Hb_002260_010 Hb_003020_150--Hb_002260_010 Hb_008232_010 Hb_008232_010 Hb_015183_060--Hb_008232_010 Hb_000982_080 Hb_000982_080 Hb_015183_060--Hb_000982_080 Hb_000673_020 Hb_000673_020 Hb_015183_060--Hb_000673_020 Hb_015183_060--Hb_002016_080 Hb_001892_070 Hb_001892_070 Hb_015183_060--Hb_001892_070 Hb_000920_200 Hb_000920_200 Hb_015183_060--Hb_000920_200 Hb_027380_180--Hb_000061_130 Hb_000193_120 Hb_000193_120 Hb_027380_180--Hb_000193_120 Hb_026048_070 Hb_026048_070 Hb_027380_180--Hb_026048_070 Hb_000103_010 Hb_000103_010 Hb_027380_180--Hb_000103_010 Hb_027380_180--Hb_001085_270 Hb_005474_060 Hb_005474_060 Hb_027380_180--Hb_005474_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.42496 4.13812 7.31354 6.41671 0.964258 10.173
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7884 29.669 18.3584 12.8651 9.86861

CAGE analysis