Hb_004785_220

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig4785: 313165-314022
Sequence    

Annotation

kegg
ID pop:POPTR_0005s21130g
description POPTRDRAFT_1078697; hypothetical protein
nr
ID XP_011027360.1
description PREDICTED: dof zinc finger protein DOF1.2 [Populus euphratica]
swissprot
ID P68349
description Dof zinc finger protein DOF1.2 OS=Arabidopsis thaliana GN=DOF1.2 PE=2 SV=1
trembl
ID B9H7P5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s21130g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44582: 313240-313512
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004785_220 0.0 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.2 [Populus euphratica]
2 Hb_003032_110 0.0993416067 - - -
3 Hb_115572_010 0.1025375895 - - PREDICTED: beta-galactosidase 6 [Jatropha curcas]
4 Hb_011381_050 0.1099523001 - - PREDICTED: protein GLUTAMINE DUMPER 5-like [Jatropha curcas]
5 Hb_002073_270 0.1217282076 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
6 Hb_036520_030 0.1242497609 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
7 Hb_009117_020 0.1253561238 - - RALF-LIKE 32 family protein [Populus trichocarpa]
8 Hb_005741_030 0.1306055139 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
9 Hb_002186_110 0.1310836037 - - hypothetical protein CICLE_v10024045mg, partial [Citrus clementina]
10 Hb_001401_120 0.1315987618 - - hypothetical protein JCGZ_04273 [Jatropha curcas]
11 Hb_103225_030 0.132893461 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
12 Hb_100732_020 0.1361612492 - - hypothetical protein POPTR_0001s15930g [Populus trichocarpa]
13 Hb_000724_060 0.1396363998 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
14 Hb_000083_200 0.1410381928 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007185_050 0.1415911407 - - hypothetical protein JCGZ_22475 [Jatropha curcas]
16 Hb_001349_040 0.1419725893 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]
17 Hb_001136_040 0.1424061019 - - amino acid transporter, putative [Ricinus communis]
18 Hb_009070_020 0.1427086577 - - PREDICTED: uncharacterized protein LOC102612959 [Citrus sinensis]
19 Hb_004032_290 0.1474487178 - - protein binding protein, putative [Ricinus communis]
20 Hb_004607_060 0.1494216395 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2 [Jatropha curcas]

Gene co-expression network

sample Hb_004785_220 Hb_004785_220 Hb_003032_110 Hb_003032_110 Hb_004785_220--Hb_003032_110 Hb_115572_010 Hb_115572_010 Hb_004785_220--Hb_115572_010 Hb_011381_050 Hb_011381_050 Hb_004785_220--Hb_011381_050 Hb_002073_270 Hb_002073_270 Hb_004785_220--Hb_002073_270 Hb_036520_030 Hb_036520_030 Hb_004785_220--Hb_036520_030 Hb_009117_020 Hb_009117_020 Hb_004785_220--Hb_009117_020 Hb_003032_110--Hb_036520_030 Hb_001110_060 Hb_001110_060 Hb_003032_110--Hb_001110_060 Hb_005741_030 Hb_005741_030 Hb_003032_110--Hb_005741_030 Hb_000724_060 Hb_000724_060 Hb_003032_110--Hb_000724_060 Hb_001408_080 Hb_001408_080 Hb_003032_110--Hb_001408_080 Hb_001136_040 Hb_001136_040 Hb_003032_110--Hb_001136_040 Hb_115572_010--Hb_011381_050 Hb_115572_010--Hb_009117_020 Hb_000083_200 Hb_000083_200 Hb_115572_010--Hb_000083_200 Hb_001349_040 Hb_001349_040 Hb_115572_010--Hb_001349_040 Hb_002186_110 Hb_002186_110 Hb_115572_010--Hb_002186_110 Hb_001401_120 Hb_001401_120 Hb_115572_010--Hb_001401_120 Hb_011381_050--Hb_002186_110 Hb_011381_050--Hb_009117_020 Hb_011381_050--Hb_001401_120 Hb_011381_050--Hb_036520_030 Hb_000197_260 Hb_000197_260 Hb_011381_050--Hb_000197_260 Hb_009522_010 Hb_009522_010 Hb_002073_270--Hb_009522_010 Hb_020375_010 Hb_020375_010 Hb_002073_270--Hb_020375_010 Hb_015934_090 Hb_015934_090 Hb_002073_270--Hb_015934_090 Hb_100732_020 Hb_100732_020 Hb_002073_270--Hb_100732_020 Hb_007185_050 Hb_007185_050 Hb_002073_270--Hb_007185_050 Hb_000620_040 Hb_000620_040 Hb_002073_270--Hb_000620_040 Hb_004032_290 Hb_004032_290 Hb_036520_030--Hb_004032_290 Hb_036520_030--Hb_001408_080 Hb_001427_100 Hb_001427_100 Hb_036520_030--Hb_001427_100 Hb_002874_200 Hb_002874_200 Hb_036520_030--Hb_002874_200 Hb_003466_010 Hb_003466_010 Hb_036520_030--Hb_003466_010 Hb_010164_030 Hb_010164_030 Hb_036520_030--Hb_010164_030 Hb_009117_020--Hb_001401_120 Hb_148262_010 Hb_148262_010 Hb_009117_020--Hb_148262_010 Hb_005614_020 Hb_005614_020 Hb_009117_020--Hb_005614_020 Hb_026124_020 Hb_026124_020 Hb_009117_020--Hb_026124_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.182 1.42418 7.2097 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.176215 0 2.34786

CAGE analysis