Hb_004696_050

Information

Type -
Description -
Location Contig4696: 32775-34254
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004696_050 0.0 - - -
2 Hb_007849_030 0.2709597875 - - l-allo-threonine aldolase, putative [Ricinus communis]
3 Hb_168418_010 0.2994394843 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
4 Hb_006869_010 0.3160649415 - - unnamed protein product [Coffea canephora]
5 Hb_004060_010 0.3283079775 - - -
6 Hb_001811_040 0.3391030854 - - -
7 Hb_113733_010 0.3497788163 - - hypothetical protein JCGZ_26531 [Jatropha curcas]
8 Hb_002477_230 0.3537330171 - - PREDICTED: verprolin [Jatropha curcas]
9 Hb_175445_010 0.3539710765 - - Pectin methylesterase 31 isoform 2, partial [Theobroma cacao]
10 Hb_011431_010 0.3553784196 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_003788_040 0.3600042924 - - -
12 Hb_031862_050 0.3602163626 - - Cell division cycle protein, putative [Ricinus communis]
13 Hb_010098_070 0.3624167999 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001980_020 0.3625622332 - - -
15 Hb_065642_010 0.3687250336 - - -
16 Hb_027751_030 0.3716695963 - - -
17 Hb_002843_190 0.3731212471 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 7 isoform X1 [Jatropha curcas]
18 Hb_000046_020 0.3731774167 - - -
19 Hb_007810_050 0.3760609951 - - protein with unknown function [Ricinus communis]
20 Hb_019617_010 0.3787587186 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_004696_050 Hb_004696_050 Hb_007849_030 Hb_007849_030 Hb_004696_050--Hb_007849_030 Hb_168418_010 Hb_168418_010 Hb_004696_050--Hb_168418_010 Hb_006869_010 Hb_006869_010 Hb_004696_050--Hb_006869_010 Hb_004060_010 Hb_004060_010 Hb_004696_050--Hb_004060_010 Hb_001811_040 Hb_001811_040 Hb_004696_050--Hb_001811_040 Hb_113733_010 Hb_113733_010 Hb_004696_050--Hb_113733_010 Hb_002477_230 Hb_002477_230 Hb_007849_030--Hb_002477_230 Hb_001980_020 Hb_001980_020 Hb_007849_030--Hb_001980_020 Hb_003253_010 Hb_003253_010 Hb_007849_030--Hb_003253_010 Hb_175445_010 Hb_175445_010 Hb_007849_030--Hb_175445_010 Hb_007810_050 Hb_007810_050 Hb_007849_030--Hb_007810_050 Hb_003777_070 Hb_003777_070 Hb_007849_030--Hb_003777_070 Hb_031862_050 Hb_031862_050 Hb_168418_010--Hb_031862_050 Hb_010588_010 Hb_010588_010 Hb_168418_010--Hb_010588_010 Hb_168418_010--Hb_113733_010 Hb_029162_020 Hb_029162_020 Hb_168418_010--Hb_029162_020 Hb_002750_020 Hb_002750_020 Hb_168418_010--Hb_002750_020 Hb_048610_010 Hb_048610_010 Hb_168418_010--Hb_048610_010 Hb_002027_150 Hb_002027_150 Hb_006869_010--Hb_002027_150 Hb_001401_080 Hb_001401_080 Hb_006869_010--Hb_001401_080 Hb_000752_050 Hb_000752_050 Hb_006869_010--Hb_000752_050 Hb_006269_050 Hb_006269_050 Hb_006869_010--Hb_006269_050 Hb_005565_060 Hb_005565_060 Hb_006869_010--Hb_005565_060 Hb_000982_110 Hb_000982_110 Hb_006869_010--Hb_000982_110 Hb_000352_150 Hb_000352_150 Hb_004060_010--Hb_000352_150 Hb_004060_010--Hb_001980_020 Hb_004060_010--Hb_175445_010 Hb_002875_090 Hb_002875_090 Hb_004060_010--Hb_002875_090 Hb_003636_090 Hb_003636_090 Hb_004060_010--Hb_003636_090 Hb_003756_010 Hb_003756_010 Hb_004060_010--Hb_003756_010 Hb_008078_030 Hb_008078_030 Hb_001811_040--Hb_008078_030 Hb_017417_010 Hb_017417_010 Hb_001811_040--Hb_017417_010 Hb_145761_010 Hb_145761_010 Hb_001811_040--Hb_145761_010 Hb_000922_150 Hb_000922_150 Hb_001811_040--Hb_000922_150 Hb_004048_140 Hb_004048_140 Hb_001811_040--Hb_004048_140 Hb_000183_070 Hb_000183_070 Hb_001811_040--Hb_000183_070 Hb_003073_140 Hb_003073_140 Hb_113733_010--Hb_003073_140 Hb_065642_010 Hb_065642_010 Hb_113733_010--Hb_065642_010 Hb_113733_010--Hb_007849_030 Hb_019762_040 Hb_019762_040 Hb_113733_010--Hb_019762_040 Hb_113733_010--Hb_031862_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.847754 0 0 0 0.104692 0.144452
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.125548 0.69048 0 0.0817145 0.18604

CAGE analysis