Hb_003018_170

Information

Type -
Description -
Location Contig3018: 82752-83135
Sequence    

Annotation

kegg
ID pop:POPTR_0005s11660g
description hypothetical protein
nr
ID XP_006383111.1
description hypothetical protein POPTR_0005s11660g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9MXG5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s11660g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31770: 82708-82916
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003018_170 0.0 - - hypothetical protein POPTR_0005s11660g [Populus trichocarpa]
2 Hb_000029_330 0.1789595887 - - PREDICTED: protein TIC 62, chloroplastic [Jatropha curcas]
3 Hb_001266_160 0.1947274427 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
4 Hb_000359_070 0.1955500037 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
5 Hb_000667_140 0.2008604967 - - PREDICTED: uridine kinase-like protein 3 isoform X1 [Jatropha curcas]
6 Hb_003494_030 0.2031367017 - - PREDICTED: protease Do-like 8, chloroplastic [Jatropha curcas]
7 Hb_003336_020 0.2039466017 - - PREDICTED: probable sodium/metabolite cotransporter BASS3, chloroplastic [Vitis vinifera]
8 Hb_002304_180 0.2057164052 - - PREDICTED: magnesium-chelatase subunit ChlI, chloroplastic [Jatropha curcas]
9 Hb_000023_210 0.2092737545 - - PREDICTED: protein TIC 55, chloroplastic [Jatropha curcas]
10 Hb_002477_020 0.2100863783 - - PREDICTED: uncharacterized protein LOC105631402 [Jatropha curcas]
11 Hb_006816_040 0.2110026963 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like [Jatropha curcas]
12 Hb_001294_030 0.2116071627 - - PREDICTED: uncharacterized protein LOC105644307 [Jatropha curcas]
13 Hb_000699_080 0.2127431343 - - PREDICTED: rubisco accumulation factor 1, chloroplastic [Jatropha curcas]
14 Hb_002835_090 0.2127553592 - - RecName: Full=Elongation factor Tu, chloroplastic; Short=EF-Tu; Flags: Precursor [Glycine max]
15 Hb_003106_170 0.2150989351 - - Endonuclease III, putative [Ricinus communis]
16 Hb_000069_370 0.2151298767 - - -
17 Hb_001133_100 0.2156410053 - - PREDICTED: oligopeptide transporter 6-like [Jatropha curcas]
18 Hb_000898_090 0.2188665853 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105633600 isoform X1 [Jatropha curcas]
19 Hb_007765_050 0.2192349408 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 isoform X1 [Jatropha curcas]
20 Hb_000367_220 0.2201452462 - - hypothetical protein RCOM_1470580 [Ricinus communis]

Gene co-expression network

sample Hb_003018_170 Hb_003018_170 Hb_000029_330 Hb_000029_330 Hb_003018_170--Hb_000029_330 Hb_001266_160 Hb_001266_160 Hb_003018_170--Hb_001266_160 Hb_000359_070 Hb_000359_070 Hb_003018_170--Hb_000359_070 Hb_000667_140 Hb_000667_140 Hb_003018_170--Hb_000667_140 Hb_003494_030 Hb_003494_030 Hb_003018_170--Hb_003494_030 Hb_003336_020 Hb_003336_020 Hb_003018_170--Hb_003336_020 Hb_000029_330--Hb_001266_160 Hb_000317_180 Hb_000317_180 Hb_000029_330--Hb_000317_180 Hb_134949_010 Hb_134949_010 Hb_000029_330--Hb_134949_010 Hb_002835_090 Hb_002835_090 Hb_000029_330--Hb_002835_090 Hb_000898_090 Hb_000898_090 Hb_000029_330--Hb_000898_090 Hb_004979_050 Hb_004979_050 Hb_000029_330--Hb_004979_050 Hb_001266_160--Hb_000359_070 Hb_001266_160--Hb_004979_050 Hb_001266_160--Hb_000317_180 Hb_001266_160--Hb_134949_010 Hb_000359_160 Hb_000359_160 Hb_001266_160--Hb_000359_160 Hb_011900_020 Hb_011900_020 Hb_000359_070--Hb_011900_020 Hb_156850_020 Hb_156850_020 Hb_000359_070--Hb_156850_020 Hb_012940_020 Hb_012940_020 Hb_000359_070--Hb_012940_020 Hb_000038_020 Hb_000038_020 Hb_000359_070--Hb_000038_020 Hb_028960_010 Hb_028960_010 Hb_000359_070--Hb_028960_010 Hb_000667_140--Hb_000038_020 Hb_002304_180 Hb_002304_180 Hb_000667_140--Hb_002304_180 Hb_003427_080 Hb_003427_080 Hb_000667_140--Hb_003427_080 Hb_000667_140--Hb_003494_030 Hb_000667_140--Hb_001266_160 Hb_000667_140--Hb_000359_070 Hb_003494_030--Hb_002304_180 Hb_000032_390 Hb_000032_390 Hb_003494_030--Hb_000032_390 Hb_002232_380 Hb_002232_380 Hb_003494_030--Hb_002232_380 Hb_006829_080 Hb_006829_080 Hb_003494_030--Hb_006829_080 Hb_000193_220 Hb_000193_220 Hb_003494_030--Hb_000193_220 Hb_003336_020--Hb_012940_020 Hb_003336_020--Hb_028960_010 Hb_000699_080 Hb_000699_080 Hb_003336_020--Hb_000699_080 Hb_003336_020--Hb_000359_070 Hb_002686_060 Hb_002686_060 Hb_003336_020--Hb_002686_060 Hb_003336_020--Hb_156850_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.567232 0.080167 3.48775 2.59493 0.69236 0.668915
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.215811 2.54292 0.26776 0.146534 17.3285

CAGE analysis