Hb_002686_130

Information

Type transcription factor
Description TF Family: G2-like
Location Contig2686: 69168-72010
Sequence    

Annotation

kegg
ID rcu:RCOM_1121810
description transcription factor, putative
nr
ID XP_012092686.1
description PREDICTED: uncharacterized protein LOC105650401 [Jatropha curcas]
swissprot
ID Q9SAK5
description Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2
trembl
ID A0A067JLA4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06855 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb family transcription factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28001: 69072-72281
cDNA
(Sanger)
(ID:Location)		 015_B17.ab1: 69072-71272 , 051_E13.ab1: 69072-69210

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002686_130 0.0 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105650401 [Jatropha curcas]
2 Hb_030565_050 0.1404596336 - - UDP-D-GLUCURONATE 4-EPIMERASE 6 family protein [Populus trichocarpa]
3 Hb_005539_140 0.1513325177 - - PREDICTED: U-box domain-containing protein 19-like [Jatropha curcas]
4 Hb_004449_090 0.1672405793 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
5 Hb_150486_010 0.175257162 - - hypothetical protein CICLE_v100116733mg, partial [Citrus clementina]
6 Hb_003086_030 0.1828387538 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
7 Hb_025645_020 0.1876530615 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
8 Hb_003623_040 0.1900421444 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
9 Hb_000176_080 0.1941447491 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g30520 [Jatropha curcas]
10 Hb_005489_150 0.1946156774 - - hypothetical protein JCGZ_20759 [Jatropha curcas]
11 Hb_000108_180 0.1962735439 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
12 Hb_003554_040 0.1964253693 - - -
13 Hb_000805_140 0.1976998281 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
14 Hb_001541_060 0.198157949 - - conserved hypothetical protein [Ricinus communis]
15 Hb_023308_010 0.1997573987 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
16 Hb_014361_090 0.2001318635 - - acyl-CoA binding protein 3A [Vernicia fordii]
17 Hb_007044_160 0.2005560934 transcription factor TF Family: TCP PREDICTED: transcription factor CYCLOIDEA [Populus euphratica]
18 Hb_000251_120 0.2038307819 - - O-acetyltransferase, putative [Ricinus communis]
19 Hb_001711_080 0.2038320001 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Phoenix dactylifera]
20 Hb_000367_080 0.2038643586 - - PREDICTED: UDP-glucose 6-dehydrogenase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_002686_130 Hb_002686_130 Hb_030565_050 Hb_030565_050 Hb_002686_130--Hb_030565_050 Hb_005539_140 Hb_005539_140 Hb_002686_130--Hb_005539_140 Hb_004449_090 Hb_004449_090 Hb_002686_130--Hb_004449_090 Hb_150486_010 Hb_150486_010 Hb_002686_130--Hb_150486_010 Hb_003086_030 Hb_003086_030 Hb_002686_130--Hb_003086_030 Hb_025645_020 Hb_025645_020 Hb_002686_130--Hb_025645_020 Hb_014361_090 Hb_014361_090 Hb_030565_050--Hb_014361_090 Hb_030565_050--Hb_004449_090 Hb_000684_220 Hb_000684_220 Hb_030565_050--Hb_000684_220 Hb_030565_050--Hb_005539_140 Hb_000176_080 Hb_000176_080 Hb_030565_050--Hb_000176_080 Hb_000603_020 Hb_000603_020 Hb_030565_050--Hb_000603_020 Hb_005489_150 Hb_005489_150 Hb_005539_140--Hb_005489_150 Hb_000479_060 Hb_000479_060 Hb_005539_140--Hb_000479_060 Hb_000455_070 Hb_000455_070 Hb_005539_140--Hb_000455_070 Hb_000030_130 Hb_000030_130 Hb_005539_140--Hb_000030_130 Hb_000109_190 Hb_000109_190 Hb_005539_140--Hb_000109_190 Hb_160405_010 Hb_160405_010 Hb_004449_090--Hb_160405_010 Hb_000028_580 Hb_000028_580 Hb_004449_090--Hb_000028_580 Hb_000300_230 Hb_000300_230 Hb_004449_090--Hb_000300_230 Hb_002289_150 Hb_002289_150 Hb_004449_090--Hb_002289_150 Hb_011828_010 Hb_011828_010 Hb_004449_090--Hb_011828_010 Hb_000165_020 Hb_000165_020 Hb_150486_010--Hb_000165_020 Hb_001541_060 Hb_001541_060 Hb_150486_010--Hb_001541_060 Hb_000108_180 Hb_000108_180 Hb_150486_010--Hb_000108_180 Hb_150486_010--Hb_025645_020 Hb_000236_230 Hb_000236_230 Hb_150486_010--Hb_000236_230 Hb_001366_110 Hb_001366_110 Hb_150486_010--Hb_001366_110 Hb_000003_580 Hb_000003_580 Hb_003086_030--Hb_000003_580 Hb_003125_210 Hb_003125_210 Hb_003086_030--Hb_003125_210 Hb_002894_080 Hb_002894_080 Hb_003086_030--Hb_002894_080 Hb_003086_030--Hb_000030_130 Hb_019516_060 Hb_019516_060 Hb_003086_030--Hb_019516_060 Hb_000457_120 Hb_000457_120 Hb_003086_030--Hb_000457_120 Hb_003177_040 Hb_003177_040 Hb_025645_020--Hb_003177_040 Hb_025645_020--Hb_000176_080 Hb_025645_020--Hb_000108_180 Hb_003623_040 Hb_003623_040 Hb_025645_020--Hb_003623_040 Hb_001789_100 Hb_001789_100 Hb_025645_020--Hb_001789_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.349703 3.62992 1.47143 14.2719 1.13983 1.26254
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0336572 0 0.99237 0.835726 6.35231

CAGE analysis