Hb_002112_010

Information

Type -
Description -
Location Contig2112: 41686-42943
Sequence    

Annotation

kegg
ID pop:POPTR_0001s45830g
description hypothetical protein
nr
ID XP_002298985.2
description hypothetical protein POPTR_0001s45830g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GJJ9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s45830g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21905: 43620-44337
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002112_010 0.0 - - hypothetical protein POPTR_0001s45830g [Populus trichocarpa]
2 Hb_100180_010 0.189472305 - - PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
3 Hb_007218_100 0.1939260145 - - phosphofructokinase [Hevea brasiliensis]
4 Hb_010827_020 0.2293866175 - - 60S ribosomal protein L17B [Hevea brasiliensis]
5 Hb_004907_020 0.2359304464 - - PREDICTED: ABC transporter G family member 6-like [Jatropha curcas]
6 Hb_003376_290 0.2371623054 - - hypothetical protein POPTR_0010s22880g [Populus trichocarpa]
7 Hb_060618_010 0.2404876215 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
8 Hb_115940_010 0.2430048021 - - putative auxin-amidohydrolase precursor family protein [Populus trichocarpa]
9 Hb_003784_050 0.2450175387 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
10 Hb_000836_140 0.2456231809 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
11 Hb_002260_160 0.2459416891 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000061_130 0.2464050407 - - rotamase, putative [Ricinus communis]
13 Hb_004567_020 0.2470919172 - - Small ubiquitin-related modifier 2 [Morus notabilis]
14 Hb_009838_010 0.2489579541 - - -
15 Hb_001434_070 0.2497371423 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
16 Hb_000483_250 0.2524748458 - - PREDICTED: uncharacterized protein LOC105803540 [Gossypium raimondii]
17 Hb_000302_290 0.2571055585 - - 40S ribosomal S10-3 -like protein [Gossypium arboreum]
18 Hb_004136_030 0.2578307341 - - -
19 Hb_003683_080 0.2606151177 - - Angio-associated migratory cell protein, putative [Ricinus communis]
20 Hb_132998_010 0.2644539121 - - hypothetical protein JCGZ_00197 [Jatropha curcas]

Gene co-expression network

sample Hb_002112_010 Hb_002112_010 Hb_100180_010 Hb_100180_010 Hb_002112_010--Hb_100180_010 Hb_007218_100 Hb_007218_100 Hb_002112_010--Hb_007218_100 Hb_010827_020 Hb_010827_020 Hb_002112_010--Hb_010827_020 Hb_004907_020 Hb_004907_020 Hb_002112_010--Hb_004907_020 Hb_003376_290 Hb_003376_290 Hb_002112_010--Hb_003376_290 Hb_060618_010 Hb_060618_010 Hb_002112_010--Hb_060618_010 Hb_004429_110 Hb_004429_110 Hb_100180_010--Hb_004429_110 Hb_004567_020 Hb_004567_020 Hb_100180_010--Hb_004567_020 Hb_001307_210 Hb_001307_210 Hb_100180_010--Hb_001307_210 Hb_100180_010--Hb_007218_100 Hb_000302_290 Hb_000302_290 Hb_100180_010--Hb_000302_290 Hb_002260_160 Hb_002260_160 Hb_100180_010--Hb_002260_160 Hb_000152_100 Hb_000152_100 Hb_007218_100--Hb_000152_100 Hb_007218_100--Hb_010827_020 Hb_007218_100--Hb_002260_160 Hb_021888_120 Hb_021888_120 Hb_007218_100--Hb_021888_120 Hb_001579_140 Hb_001579_140 Hb_007218_100--Hb_001579_140 Hb_001832_120 Hb_001832_120 Hb_010827_020--Hb_001832_120 Hb_002248_100 Hb_002248_100 Hb_010827_020--Hb_002248_100 Hb_000635_080 Hb_000635_080 Hb_010827_020--Hb_000635_080 Hb_000780_210 Hb_000780_210 Hb_010827_020--Hb_000780_210 Hb_001700_020 Hb_001700_020 Hb_010827_020--Hb_001700_020 Hb_183086_040 Hb_183086_040 Hb_010827_020--Hb_183086_040 Hb_004907_020--Hb_002260_160 Hb_000487_280 Hb_000487_280 Hb_004907_020--Hb_000487_280 Hb_004136_030 Hb_004136_030 Hb_004907_020--Hb_004136_030 Hb_000011_340 Hb_000011_340 Hb_004907_020--Hb_000011_340 Hb_001520_020 Hb_001520_020 Hb_004907_020--Hb_001520_020 Hb_001434_070 Hb_001434_070 Hb_003376_290--Hb_001434_070 Hb_004209_030 Hb_004209_030 Hb_003376_290--Hb_004209_030 Hb_004545_130 Hb_004545_130 Hb_003376_290--Hb_004545_130 Hb_003376_290--Hb_001307_210 Hb_003376_290--Hb_000635_080 Hb_005000_180 Hb_005000_180 Hb_003376_290--Hb_005000_180 Hb_000483_250 Hb_000483_250 Hb_060618_010--Hb_000483_250 Hb_000836_140 Hb_000836_140 Hb_060618_010--Hb_000836_140 Hb_060618_010--Hb_002248_100 Hb_001017_070 Hb_001017_070 Hb_060618_010--Hb_001017_070 Hb_007943_140 Hb_007943_140 Hb_060618_010--Hb_007943_140 Hb_060618_010--Hb_010827_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.040554 0.1857 0.0635428 0 0 0.115302
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.751864 1.10804 0.260185 0.543779 0.144032

CAGE analysis