Hb_002014_100

Information

Type -
Description -
Location Contig2014: 112866-121359
Sequence    

Annotation

kegg
ID rcu:RCOM_1052750
description sugar transporter, putative (EC:1.3.1.74)
nr
ID XP_002514302.1
description sugar transporter, putative [Ricinus communis]
swissprot
ID Q8VZ80
description Polyol transporter 5 OS=Arabidopsis thaliana GN=PLT5 PE=1 SV=2
trembl
ID B9RKQ8
description Sugar transporter, putative OS=Ricinus communis GN=RCOM_1052750 PE=3 SV=1
Gene Ontology
ID GO:0016021
description polyol transporter 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20465: 118067-118499
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002014_100 0.0 - - sugar transporter, putative [Ricinus communis]
2 Hb_001269_630 0.1025619009 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]
3 Hb_000788_090 0.1073305147 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X2 [Glycine max]
4 Hb_001442_020 0.111045544 - - unknown [Populus trichocarpa]
5 Hb_002110_120 0.1117312236 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
6 Hb_000368_010 0.1191907331 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 18 [Jatropha curcas]
7 Hb_005463_030 0.1193996608 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
8 Hb_001059_030 0.1207696287 - - PREDICTED: F-box protein At5g03100-like [Solanum lycopersicum]
9 Hb_005645_010 0.1226122876 - - rhythmically-expressed protein 2 protein, putative [Ricinus communis]
10 Hb_003963_010 0.1227185802 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000200_100 0.1238137184 - - hypothetical protein POPTR_0013s14810g, partial [Populus trichocarpa]
12 Hb_000622_090 0.1260167561 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
13 Hb_000302_010 0.1283969156 - - Vesicle-associated membrane protein, putative [Ricinus communis]
14 Hb_001454_120 0.1285028231 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000258_170 0.1286209076 - - PREDICTED: uncharacterized protein LOC105630437 [Jatropha curcas]
16 Hb_001863_390 0.130897232 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]
17 Hb_004994_100 0.1331883603 - - acyl-CoA thioesterase, putative [Ricinus communis]
18 Hb_003656_070 0.1345526722 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
19 Hb_004735_040 0.1357270687 - - PREDICTED: GTP-binding nuclear protein Ran1A-like [Jatropha curcas]
20 Hb_000062_220 0.1365487477 - - BnaC02g35870D [Brassica napus]

Gene co-expression network

sample Hb_002014_100 Hb_002014_100 Hb_001269_630 Hb_001269_630 Hb_002014_100--Hb_001269_630 Hb_000788_090 Hb_000788_090 Hb_002014_100--Hb_000788_090 Hb_001442_020 Hb_001442_020 Hb_002014_100--Hb_001442_020 Hb_002110_120 Hb_002110_120 Hb_002014_100--Hb_002110_120 Hb_000368_010 Hb_000368_010 Hb_002014_100--Hb_000368_010 Hb_005463_030 Hb_005463_030 Hb_002014_100--Hb_005463_030 Hb_001269_630--Hb_002110_120 Hb_001832_060 Hb_001832_060 Hb_001269_630--Hb_001832_060 Hb_007317_150 Hb_007317_150 Hb_001269_630--Hb_007317_150 Hb_003656_070 Hb_003656_070 Hb_001269_630--Hb_003656_070 Hb_000020_060 Hb_000020_060 Hb_001269_630--Hb_000020_060 Hb_002686_020 Hb_002686_020 Hb_001269_630--Hb_002686_020 Hb_000608_370 Hb_000608_370 Hb_000788_090--Hb_000608_370 Hb_007416_030 Hb_007416_030 Hb_000788_090--Hb_007416_030 Hb_001047_230 Hb_001047_230 Hb_000788_090--Hb_001047_230 Hb_000788_090--Hb_003656_070 Hb_000788_090--Hb_002110_120 Hb_008173_090 Hb_008173_090 Hb_000788_090--Hb_008173_090 Hb_001442_020--Hb_002110_120 Hb_000200_100 Hb_000200_100 Hb_001442_020--Hb_000200_100 Hb_001442_020--Hb_001269_630 Hb_007101_150 Hb_007101_150 Hb_001442_020--Hb_007101_150 Hb_001442_020--Hb_008173_090 Hb_000522_080 Hb_000522_080 Hb_001442_020--Hb_000522_080 Hb_002110_120--Hb_007317_150 Hb_002110_120--Hb_000020_060 Hb_001235_190 Hb_001235_190 Hb_002110_120--Hb_001235_190 Hb_002110_120--Hb_003656_070 Hb_002110_120--Hb_008173_090 Hb_000347_410 Hb_000347_410 Hb_000368_010--Hb_000347_410 Hb_011173_050 Hb_011173_050 Hb_000368_010--Hb_011173_050 Hb_000111_330 Hb_000111_330 Hb_000368_010--Hb_000111_330 Hb_001059_030 Hb_001059_030 Hb_000368_010--Hb_001059_030 Hb_002851_020 Hb_002851_020 Hb_000368_010--Hb_002851_020 Hb_004586_320 Hb_004586_320 Hb_000368_010--Hb_004586_320 Hb_000175_060 Hb_000175_060 Hb_005463_030--Hb_000175_060 Hb_001998_050 Hb_001998_050 Hb_005463_030--Hb_001998_050 Hb_005463_030--Hb_001442_020 Hb_007943_090 Hb_007943_090 Hb_005463_030--Hb_007943_090 Hb_000227_230 Hb_000227_230 Hb_005463_030--Hb_000227_230 Hb_005645_010 Hb_005645_010 Hb_005463_030--Hb_005645_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.210346 0.267277 0.139072 0.240668 0.604463 0.207083
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.557618 0.802367 0.502849 0.164181 0.133518

CAGE analysis