Hb_001976_120

Information

Type -
Description -
Location Contig1976: 148798-150317
Sequence    

Annotation

kegg
ID rcu:RCOM_0410720
description UDP-glucosyltransferase, putative (EC:2.4.1.115)
nr
ID XP_012081690.1
description PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
swissprot
ID Q66PF2
description Putative UDP-rhamnose:rhamnosyltransferase 1 OS=Fragaria ananassa GN=GT4 PE=2 SV=1
trembl
ID A0A067K0Q8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18726 PE=4 SV=1
Gene Ontology
ID GO:0016758
description udp-rhamnose:rhamnosyltransferase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001976_120 0.0 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
2 Hb_136884_010 0.135399882 - - Disease resistance protein RFL1, putative [Ricinus communis]
3 Hb_002110_210 0.1388466883 - - purine transporter, putative [Ricinus communis]
4 Hb_000504_050 0.1404483382 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
5 Hb_002735_010 0.143335674 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein 44 [Prunus mume]
6 Hb_002053_090 0.1462418173 - - conserved hypothetical protein [Ricinus communis]
7 Hb_013691_040 0.1509178573 - - hypothetical protein B456_001G045900 [Gossypium raimondii]
8 Hb_004218_230 0.1531482331 - - Peptide transporter, putative [Ricinus communis]
9 Hb_073171_010 0.1582685834 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
10 Hb_002241_020 0.162563664 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
11 Hb_183820_010 0.1643931631 - - Disease resistance protein RFL1, putative [Ricinus communis]
12 Hb_015473_010 0.1653186398 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
13 Hb_000002_230 0.1684391584 - - RING/U-box superfamily protein [Theobroma cacao]
14 Hb_000127_070 0.1684722011 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
15 Hb_001610_060 0.1705587614 - - hypothetical protein TRIUR3_12067 [Triticum urartu]
16 Hb_000316_080 0.1719171677 - - ENTH/VHS family protein [Theobroma cacao]
17 Hb_004156_010 0.1734886798 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
18 Hb_000152_250 0.1746592158 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
19 Hb_005695_020 0.1754228393 - - PREDICTED: low affinity sulfate transporter 3 [Jatropha curcas]
20 Hb_001259_100 0.176657471 - - chloride channel-like family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001976_120 Hb_001976_120 Hb_136884_010 Hb_136884_010 Hb_001976_120--Hb_136884_010 Hb_002110_210 Hb_002110_210 Hb_001976_120--Hb_002110_210 Hb_000504_050 Hb_000504_050 Hb_001976_120--Hb_000504_050 Hb_002735_010 Hb_002735_010 Hb_001976_120--Hb_002735_010 Hb_002053_090 Hb_002053_090 Hb_001976_120--Hb_002053_090 Hb_013691_040 Hb_013691_040 Hb_001976_120--Hb_013691_040 Hb_183820_010 Hb_183820_010 Hb_136884_010--Hb_183820_010 Hb_002289_110 Hb_002289_110 Hb_136884_010--Hb_002289_110 Hb_008001_020 Hb_008001_020 Hb_136884_010--Hb_008001_020 Hb_012395_150 Hb_012395_150 Hb_136884_010--Hb_012395_150 Hb_000365_290 Hb_000365_290 Hb_136884_010--Hb_000365_290 Hb_002241_020 Hb_002241_020 Hb_002110_210--Hb_002241_020 Hb_002110_210--Hb_002735_010 Hb_004218_230 Hb_004218_230 Hb_002110_210--Hb_004218_230 Hb_015473_010 Hb_015473_010 Hb_002110_210--Hb_015473_010 Hb_005147_020 Hb_005147_020 Hb_002110_210--Hb_005147_020 Hb_000127_070 Hb_000127_070 Hb_002110_210--Hb_000127_070 Hb_000504_050--Hb_004218_230 Hb_012879_010 Hb_012879_010 Hb_000504_050--Hb_012879_010 Hb_105446_010 Hb_105446_010 Hb_000504_050--Hb_105446_010 Hb_000751_210 Hb_000751_210 Hb_000504_050--Hb_000751_210 Hb_000504_050--Hb_002110_210 Hb_000504_050--Hb_013691_040 Hb_000152_250 Hb_000152_250 Hb_002735_010--Hb_000152_250 Hb_002735_010--Hb_015473_010 Hb_140848_010 Hb_140848_010 Hb_002735_010--Hb_140848_010 Hb_002735_010--Hb_000127_070 Hb_002735_010--Hb_002241_020 Hb_050898_010 Hb_050898_010 Hb_002053_090--Hb_050898_010 Hb_000002_230 Hb_000002_230 Hb_002053_090--Hb_000002_230 Hb_005695_020 Hb_005695_020 Hb_002053_090--Hb_005695_020 Hb_000316_080 Hb_000316_080 Hb_002053_090--Hb_000316_080 Hb_002053_090--Hb_140848_010 Hb_000720_060 Hb_000720_060 Hb_002053_090--Hb_000720_060 Hb_001086_020 Hb_001086_020 Hb_013691_040--Hb_001086_020 Hb_013691_040--Hb_000316_080 Hb_000987_080 Hb_000987_080 Hb_013691_040--Hb_000987_080 Hb_013691_040--Hb_050898_010 Hb_000922_290 Hb_000922_290 Hb_013691_040--Hb_000922_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.228219 28.7738 1.07979 31.6788 0.0833885 0.0734858
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.99565 17.0894 2.15497

CAGE analysis