Hb_001946_250

Information

Type -
Description -
Location Contig1946: 228178-230549
Sequence    

Annotation

kegg
ID ptm:GSPATT00003384001
description hypothetical protein
nr
ID XP_007937164.1
description PREDICTED: dnaJ homolog subfamily C member 18 [Orycteropus afer afer]
swissprot
ID Q9QYI7
description DnaJ homolog subfamily B member 8 OS=Mus musculus GN=Dnajb8 PE=2 SV=1
trembl
ID A0E5F6
description Chromosome undetermined scaffold_8, whole genome shotgun sequence OS=Paramecium tetraurelia GN=GSPATT00003384001 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001946_250 0.0 - - PREDICTED: dnaJ homolog subfamily C member 18 [Orycteropus afer afer]
2 Hb_036311_020 0.2101106868 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_001523_020 0.2211381511 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X3 [Citrus sinensis]
4 Hb_183612_100 0.2356391787 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
5 Hb_148209_110 0.2393680009 - - putative polyol transported protein 2 [Hevea brasiliensis]
6 Hb_152439_020 0.2411022382 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
7 Hb_150651_050 0.246190638 - - phosphoglycerate mutase, putative [Ricinus communis]
8 Hb_005043_010 0.2469027151 - - calcium ion binding protein, putative [Ricinus communis]
9 Hb_000635_220 0.2505163909 - - PREDICTED: F-box protein At1g67340 [Jatropha curcas]
10 Hb_006816_450 0.2523158563 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000563_550 0.2529320395 - - PREDICTED: glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Jatropha curcas]
12 Hb_000836_530 0.2553390318 - - PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
13 Hb_029510_040 0.2556314609 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Vitis vinifera]
14 Hb_000661_170 0.2565774882 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
15 Hb_005000_070 0.2577858615 - - hypothetical protein POPTR_0012s01650g [Populus trichocarpa]
16 Hb_003687_100 0.2578272639 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Jatropha curcas]
17 Hb_000317_280 0.2583314251 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At5g08490 [Jatropha curcas]
18 Hb_000343_130 0.2591205851 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
19 Hb_006816_130 0.2610566288 - - PREDICTED: uncharacterized protein LOC105647421 [Jatropha curcas]
20 Hb_000362_120 0.2622675369 - - glutamate receptor 2 plant, putative [Ricinus communis]

Gene co-expression network

sample Hb_001946_250 Hb_001946_250 Hb_036311_020 Hb_036311_020 Hb_001946_250--Hb_036311_020 Hb_001523_020 Hb_001523_020 Hb_001946_250--Hb_001523_020 Hb_183612_100 Hb_183612_100 Hb_001946_250--Hb_183612_100 Hb_148209_110 Hb_148209_110 Hb_001946_250--Hb_148209_110 Hb_152439_020 Hb_152439_020 Hb_001946_250--Hb_152439_020 Hb_150651_050 Hb_150651_050 Hb_001946_250--Hb_150651_050 Hb_036311_020--Hb_001523_020 Hb_000283_080 Hb_000283_080 Hb_036311_020--Hb_000283_080 Hb_129910_010 Hb_129910_010 Hb_036311_020--Hb_129910_010 Hb_000362_120 Hb_000362_120 Hb_036311_020--Hb_000362_120 Hb_001511_070 Hb_001511_070 Hb_036311_020--Hb_001511_070 Hb_000160_320 Hb_000160_320 Hb_036311_020--Hb_000160_320 Hb_001780_120 Hb_001780_120 Hb_001523_020--Hb_001780_120 Hb_054127_050 Hb_054127_050 Hb_001523_020--Hb_054127_050 Hb_001222_050 Hb_001222_050 Hb_001523_020--Hb_001222_050 Hb_001523_020--Hb_000362_120 Hb_130194_010 Hb_130194_010 Hb_001523_020--Hb_130194_010 Hb_003747_030 Hb_003747_030 Hb_183612_100--Hb_003747_030 Hb_008085_040 Hb_008085_040 Hb_183612_100--Hb_008085_040 Hb_183612_100--Hb_152439_020 Hb_000861_040 Hb_000861_040 Hb_183612_100--Hb_000861_040 Hb_004951_040 Hb_004951_040 Hb_183612_100--Hb_004951_040 Hb_004882_020 Hb_004882_020 Hb_183612_100--Hb_004882_020 Hb_000010_470 Hb_000010_470 Hb_148209_110--Hb_000010_470 Hb_001500_040 Hb_001500_040 Hb_148209_110--Hb_001500_040 Hb_000602_010 Hb_000602_010 Hb_148209_110--Hb_000602_010 Hb_000563_550 Hb_000563_550 Hb_148209_110--Hb_000563_550 Hb_004678_050 Hb_004678_050 Hb_148209_110--Hb_004678_050 Hb_002551_020 Hb_002551_020 Hb_148209_110--Hb_002551_020 Hb_000193_250 Hb_000193_250 Hb_152439_020--Hb_000193_250 Hb_000157_010 Hb_000157_010 Hb_152439_020--Hb_000157_010 Hb_004306_060 Hb_004306_060 Hb_152439_020--Hb_004306_060 Hb_143629_090 Hb_143629_090 Hb_152439_020--Hb_143629_090 Hb_002498_060 Hb_002498_060 Hb_152439_020--Hb_002498_060 Hb_001004_040 Hb_001004_040 Hb_150651_050--Hb_001004_040 Hb_004800_160 Hb_004800_160 Hb_150651_050--Hb_004800_160 Hb_000120_120 Hb_000120_120 Hb_150651_050--Hb_000120_120 Hb_003030_080 Hb_003030_080 Hb_150651_050--Hb_003030_080 Hb_002739_110 Hb_002739_110 Hb_150651_050--Hb_002739_110 Hb_024952_010 Hb_024952_010 Hb_150651_050--Hb_024952_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.29171 0.0297455 0 0 0.0994188 0.0626475
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.163107 0.128224 0.457291 0.208736 0.126709

CAGE analysis