Hb_001899_030

Information

Type -
Description -
Location Contig1899: 68195-72052
Sequence    

Annotation

kegg
ID rcu:RCOM_0169070
description Cyclic nucleotide-gated ion channel, putative
nr
ID KDP27204.1
description hypothetical protein JCGZ_19903 [Jatropha curcas]
swissprot
ID O65718
description Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1
trembl
ID A0A067K612
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19903 PE=4 SV=1
Gene Ontology
ID GO:0005622
description cyclic nucleotide-gated ion channel 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18859: 68148-71730
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001899_030 0.0 - - hypothetical protein JCGZ_19903 [Jatropha curcas]
2 Hb_062226_030 0.1444181146 - - -
3 Hb_004899_180 0.1573881123 - - hypothetical protein JCGZ_07531 [Jatropha curcas]
4 Hb_001606_020 0.2120956219 - - PREDICTED: cell number regulator 2-like [Malus domestica]
5 Hb_000023_270 0.2269630676 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001221_200 0.2580911835 - - -
7 Hb_001221_190 0.2770335723 - - PREDICTED: F-box protein At5g50450 [Jatropha curcas]
8 Hb_006351_060 0.2816213029 - - PREDICTED: 17.8 kDa class I heat shock protein-like [Cucumis sativus]
9 Hb_004542_020 0.2842920962 - - hypothetical chloroplast RF1 [Hevea brasiliensis]
10 Hb_000281_070 0.2881260466 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
11 Hb_005799_020 0.288203787 - - PREDICTED: bidirectional sugar transporter SWEET6b [Jatropha curcas]
12 Hb_000260_590 0.2884155724 - - electron transporter, putative [Ricinus communis]
13 Hb_022149_020 0.2885610667 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000603_270 0.2891640595 - - PREDICTED: uncharacterized protein LOC105638080 [Jatropha curcas]
15 Hb_000317_450 0.2901523736 - - PREDICTED: uncharacterized protein LOC105647032 isoform X1 [Jatropha curcas]
16 Hb_004225_140 0.2942052128 - - PREDICTED: probable receptor-like protein kinase At1g33260 [Jatropha curcas]
17 Hb_005063_080 0.2949294548 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
18 Hb_007229_030 0.2954908716 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic [Jatropha curcas]
19 Hb_002400_010 0.3001721391 - - PREDICTED: putative L-ascorbate peroxidase 6 [Jatropha curcas]
20 Hb_154114_030 0.3011372995 - - amino acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001899_030 Hb_001899_030 Hb_062226_030 Hb_062226_030 Hb_001899_030--Hb_062226_030 Hb_004899_180 Hb_004899_180 Hb_001899_030--Hb_004899_180 Hb_001606_020 Hb_001606_020 Hb_001899_030--Hb_001606_020 Hb_000023_270 Hb_000023_270 Hb_001899_030--Hb_000023_270 Hb_001221_200 Hb_001221_200 Hb_001899_030--Hb_001221_200 Hb_001221_190 Hb_001221_190 Hb_001899_030--Hb_001221_190 Hb_062226_030--Hb_001606_020 Hb_062226_030--Hb_004899_180 Hb_000186_110 Hb_000186_110 Hb_062226_030--Hb_000186_110 Hb_062226_030--Hb_000023_270 Hb_000175_640 Hb_000175_640 Hb_062226_030--Hb_000175_640 Hb_004899_180--Hb_001606_020 Hb_004899_180--Hb_000023_270 Hb_004899_180--Hb_000175_640 Hb_004899_180--Hb_000186_110 Hb_001606_020--Hb_000186_110 Hb_001606_020--Hb_000175_640 Hb_000317_450 Hb_000317_450 Hb_001606_020--Hb_000317_450 Hb_022149_020 Hb_022149_020 Hb_000023_270--Hb_022149_020 Hb_000023_270--Hb_001221_190 Hb_005976_070 Hb_005976_070 Hb_000023_270--Hb_005976_070 Hb_001252_030 Hb_001252_030 Hb_000023_270--Hb_001252_030 Hb_000347_190 Hb_000347_190 Hb_000023_270--Hb_000347_190 Hb_071079_020 Hb_071079_020 Hb_000023_270--Hb_071079_020 Hb_000866_340 Hb_000866_340 Hb_001221_200--Hb_000866_340 Hb_181838_010 Hb_181838_010 Hb_001221_200--Hb_181838_010 Hb_001221_200--Hb_001221_190 Hb_000977_290 Hb_000977_290 Hb_001221_200--Hb_000977_290 Hb_000261_400 Hb_000261_400 Hb_001221_200--Hb_000261_400 Hb_005063_080 Hb_005063_080 Hb_001221_200--Hb_005063_080 Hb_009838_020 Hb_009838_020 Hb_001221_190--Hb_009838_020 Hb_004899_340 Hb_004899_340 Hb_001221_190--Hb_004899_340 Hb_001711_080 Hb_001711_080 Hb_001221_190--Hb_001711_080 Hb_004545_180 Hb_004545_180 Hb_001221_190--Hb_004545_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0511764 2.94638 25.5496 13.84 18.8717 11.565
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0497639 0.0261061 0.0249132 0.0984445 27.8924

CAGE analysis