Hb_062226_030

Information

Type -
Description -
Location Contig62226: 10981-12497
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_062226_030 0.0 - - -
2 Hb_001899_030 0.1444181146 - - hypothetical protein JCGZ_19903 [Jatropha curcas]
3 Hb_001606_020 0.1450746439 - - PREDICTED: cell number regulator 2-like [Malus domestica]
4 Hb_004899_180 0.1662568637 - - hypothetical protein JCGZ_07531 [Jatropha curcas]
5 Hb_000186_110 0.2682289162 - - hypothetical protein CISIN_1g020639mg [Citrus sinensis]
6 Hb_000023_270 0.2781284008 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000175_640 0.2932162388 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Jatropha curcas]
8 Hb_005428_040 0.2950972573 - - -
9 Hb_011649_020 0.2965941211 - - PREDICTED: uncharacterized protein LOC104212904 isoform X1 [Nicotiana sylvestris]
10 Hb_071126_010 0.3023286891 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
11 Hb_005976_070 0.305503402 - - triacylglycerol lipase, putative [Ricinus communis]
12 Hb_000260_590 0.3102264596 - - electron transporter, putative [Ricinus communis]
13 Hb_000317_450 0.3114739269 - - PREDICTED: uncharacterized protein LOC105647032 isoform X1 [Jatropha curcas]
14 Hb_002006_010 0.3135724683 - - Adenine nucleotide alpha hydrolases-like superfamily protein, putative isoform 1 [Theobroma cacao]
15 Hb_004542_020 0.3172284849 - - hypothetical chloroplast RF1 [Hevea brasiliensis]
16 Hb_001221_200 0.3174041678 - - -
17 Hb_000340_270 0.3175524153 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
18 Hb_001716_030 0.3203183554 - - PREDICTED: uncharacterized protein LOC105633673 [Jatropha curcas]
19 Hb_007504_030 0.3215978935 - - Rpl14, partial (chloroplast) [Schistostemon retusum]
20 Hb_000603_270 0.3227343778 - - PREDICTED: uncharacterized protein LOC105638080 [Jatropha curcas]

Gene co-expression network

sample Hb_062226_030 Hb_062226_030 Hb_001899_030 Hb_001899_030 Hb_062226_030--Hb_001899_030 Hb_001606_020 Hb_001606_020 Hb_062226_030--Hb_001606_020 Hb_004899_180 Hb_004899_180 Hb_062226_030--Hb_004899_180 Hb_000186_110 Hb_000186_110 Hb_062226_030--Hb_000186_110 Hb_000023_270 Hb_000023_270 Hb_062226_030--Hb_000023_270 Hb_000175_640 Hb_000175_640 Hb_062226_030--Hb_000175_640 Hb_001899_030--Hb_004899_180 Hb_001899_030--Hb_001606_020 Hb_001899_030--Hb_000023_270 Hb_001221_200 Hb_001221_200 Hb_001899_030--Hb_001221_200 Hb_001221_190 Hb_001221_190 Hb_001899_030--Hb_001221_190 Hb_001606_020--Hb_004899_180 Hb_001606_020--Hb_000186_110 Hb_001606_020--Hb_000175_640 Hb_000317_450 Hb_000317_450 Hb_001606_020--Hb_000317_450 Hb_004899_180--Hb_000023_270 Hb_004899_180--Hb_000175_640 Hb_004899_180--Hb_000186_110 Hb_000118_090 Hb_000118_090 Hb_000186_110--Hb_000118_090 Hb_000062_480 Hb_000062_480 Hb_000186_110--Hb_000062_480 Hb_071126_010 Hb_071126_010 Hb_000186_110--Hb_071126_010 Hb_000130_330 Hb_000130_330 Hb_000186_110--Hb_000130_330 Hb_000186_110--Hb_000175_640 Hb_004611_040 Hb_004611_040 Hb_000186_110--Hb_004611_040 Hb_022149_020 Hb_022149_020 Hb_000023_270--Hb_022149_020 Hb_000023_270--Hb_001221_190 Hb_005976_070 Hb_005976_070 Hb_000023_270--Hb_005976_070 Hb_001252_030 Hb_001252_030 Hb_000023_270--Hb_001252_030 Hb_000347_190 Hb_000347_190 Hb_000023_270--Hb_000347_190 Hb_071079_020 Hb_071079_020 Hb_000023_270--Hb_071079_020 Hb_000175_640--Hb_000130_330 Hb_000768_120 Hb_000768_120 Hb_000175_640--Hb_000768_120 Hb_000175_640--Hb_000062_480 Hb_002495_090 Hb_002495_090 Hb_000175_640--Hb_002495_090 Hb_002249_090 Hb_002249_090 Hb_000175_640--Hb_002249_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.137178 0.0621778 0.104834 0.0499919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.192211

CAGE analysis