Hb_001606_020

Information

Type -
Description -
Location Contig1606: 20139-21116
Sequence    

Annotation

kegg
ID mdm:103409776
description cell number regulator 2-like
nr
ID XP_008346789.1
description PREDICTED: cell number regulator 2-like [Malus domestica]
swissprot
ID B6TZ45
description Cell number regulator 1 OS=Zea mays GN=CNR1 PE=2 SV=1
trembl
ID M5WD71
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017696mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14374: 20293-21076
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001606_020 0.0 - - PREDICTED: cell number regulator 2-like [Malus domestica]
2 Hb_062226_030 0.1450746439 - - -
3 Hb_004899_180 0.2081507562 - - hypothetical protein JCGZ_07531 [Jatropha curcas]
4 Hb_001899_030 0.2120956219 - - hypothetical protein JCGZ_19903 [Jatropha curcas]
5 Hb_000186_110 0.2134359103 - - hypothetical protein CISIN_1g020639mg [Citrus sinensis]
6 Hb_000175_640 0.2447773039 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Jatropha curcas]
7 Hb_000317_450 0.2548009274 - - PREDICTED: uncharacterized protein LOC105647032 isoform X1 [Jatropha curcas]
8 Hb_001716_030 0.2555841908 - - PREDICTED: uncharacterized protein LOC105633673 [Jatropha curcas]
9 Hb_071126_010 0.263473191 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
10 Hb_003849_050 0.2771278828 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000023_270 0.2771509972 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000118_090 0.2780428165 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
13 Hb_000260_590 0.2916456909 - - electron transporter, putative [Ricinus communis]
14 Hb_005976_070 0.2923885211 - - triacylglycerol lipase, putative [Ricinus communis]
15 Hb_011649_010 0.2928680494 transcription factor TF Family: Pseudo ARR-B sensory transduction histidine kinase, putative [Ricinus communis]
16 Hb_000340_270 0.2961968548 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
17 Hb_007317_170 0.2967559107 - - PREDICTED: protein FANTASTIC FOUR 1 [Jatropha curcas]
18 Hb_004611_040 0.3022594075 - - PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_005063_080 0.3050594701 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
20 Hb_002235_070 0.3066525449 - - PREDICTED: uncharacterized protein LOC105644108 [Jatropha curcas]

Gene co-expression network

sample Hb_001606_020 Hb_001606_020 Hb_062226_030 Hb_062226_030 Hb_001606_020--Hb_062226_030 Hb_004899_180 Hb_004899_180 Hb_001606_020--Hb_004899_180 Hb_001899_030 Hb_001899_030 Hb_001606_020--Hb_001899_030 Hb_000186_110 Hb_000186_110 Hb_001606_020--Hb_000186_110 Hb_000175_640 Hb_000175_640 Hb_001606_020--Hb_000175_640 Hb_000317_450 Hb_000317_450 Hb_001606_020--Hb_000317_450 Hb_062226_030--Hb_001899_030 Hb_062226_030--Hb_004899_180 Hb_062226_030--Hb_000186_110 Hb_000023_270 Hb_000023_270 Hb_062226_030--Hb_000023_270 Hb_062226_030--Hb_000175_640 Hb_004899_180--Hb_001899_030 Hb_004899_180--Hb_000023_270 Hb_004899_180--Hb_000175_640 Hb_004899_180--Hb_000186_110 Hb_001899_030--Hb_000023_270 Hb_001221_200 Hb_001221_200 Hb_001899_030--Hb_001221_200 Hb_001221_190 Hb_001221_190 Hb_001899_030--Hb_001221_190 Hb_000118_090 Hb_000118_090 Hb_000186_110--Hb_000118_090 Hb_000062_480 Hb_000062_480 Hb_000186_110--Hb_000062_480 Hb_071126_010 Hb_071126_010 Hb_000186_110--Hb_071126_010 Hb_000130_330 Hb_000130_330 Hb_000186_110--Hb_000130_330 Hb_000186_110--Hb_000175_640 Hb_004611_040 Hb_004611_040 Hb_000186_110--Hb_004611_040 Hb_000175_640--Hb_000130_330 Hb_000768_120 Hb_000768_120 Hb_000175_640--Hb_000768_120 Hb_000175_640--Hb_000062_480 Hb_002495_090 Hb_002495_090 Hb_000175_640--Hb_002495_090 Hb_002249_090 Hb_002249_090 Hb_000175_640--Hb_002249_090 Hb_005063_080 Hb_005063_080 Hb_000317_450--Hb_005063_080 Hb_003647_020 Hb_003647_020 Hb_000317_450--Hb_003647_020 Hb_001623_080 Hb_001623_080 Hb_000317_450--Hb_001623_080 Hb_000116_400 Hb_000116_400 Hb_000317_450--Hb_000116_400 Hb_003777_250 Hb_003777_250 Hb_000317_450--Hb_003777_250 Hb_006198_130 Hb_006198_130 Hb_000317_450--Hb_006198_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.263042 0 4.31745 2.37067 3.73742 0.627689
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0634766 0 0.0516507 6.90604

CAGE analysis