Hb_000805_250

Information

Type -
Description -
Location Contig805: 239480-243989
Sequence    

Annotation

kegg
ID pop:POPTR_0009s03720g
description POPTRDRAFT_203735; hypothetical protein
nr
ID XP_012092564.1
description PREDICTED: rhomboid-like protease 2 [Jatropha curcas]
swissprot
ID Q6GMF8
description Inactive rhomboid protein 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1
trembl
ID A0A067JKB4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05305 PE=4 SV=1
Gene Ontology
ID GO:0005794
description inactive rhomboid protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58994: 240825-241097 , PASA_asmbl_58995: 242472-243184
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000805_250 0.0 - - PREDICTED: rhomboid-like protease 2 [Jatropha curcas]
2 Hb_020419_020 0.0977528638 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
3 Hb_000140_050 0.1003123457 - - PREDICTED: sphingoid long-chain bases kinase 2, mitochondrial [Jatropha curcas]
4 Hb_068056_030 0.1093214922 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
5 Hb_000300_220 0.1106213044 - - PREDICTED: uncharacterized protein LOC105632569 [Jatropha curcas]
6 Hb_006569_100 0.1115803727 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]
7 Hb_001314_040 0.117589142 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]
8 Hb_001396_100 0.1206518002 - - DNA binding protein, putative [Ricinus communis]
9 Hb_006831_120 0.1217374494 - - PREDICTED: uncharacterized protein LOC105642121 isoform X1 [Jatropha curcas]
10 Hb_001218_040 0.1268456572 - - Mitochondrial substrate carrier family protein [Theobroma cacao]
11 Hb_001008_090 0.1279377754 - - cytochrome C oxidase, putative [Ricinus communis]
12 Hb_094608_010 0.1287134774 - - PREDICTED: uncharacterized protein LOC105630444 isoform X3 [Jatropha curcas]
13 Hb_001776_160 0.1297023376 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
14 Hb_001904_090 0.1301081535 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
15 Hb_000802_100 0.1302989475 - - PREDICTED: uncharacterized protein LOC105634009 [Jatropha curcas]
16 Hb_001461_010 0.1306603982 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
17 Hb_000023_340 0.1320282946 - - PREDICTED: enhancer of rudimentary homolog [Jatropha curcas]
18 Hb_000181_300 0.132105167 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
19 Hb_000103_010 0.1322968832 - - 20S proteasome beta subunit D2 [Hevea brasiliensis]
20 Hb_003349_080 0.1330006767 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]

Gene co-expression network

sample Hb_000805_250 Hb_000805_250 Hb_020419_020 Hb_020419_020 Hb_000805_250--Hb_020419_020 Hb_000140_050 Hb_000140_050 Hb_000805_250--Hb_000140_050 Hb_068056_030 Hb_068056_030 Hb_000805_250--Hb_068056_030 Hb_000300_220 Hb_000300_220 Hb_000805_250--Hb_000300_220 Hb_006569_100 Hb_006569_100 Hb_000805_250--Hb_006569_100 Hb_001314_040 Hb_001314_040 Hb_000805_250--Hb_001314_040 Hb_020419_020--Hb_006569_100 Hb_020419_020--Hb_001314_040 Hb_001008_090 Hb_001008_090 Hb_020419_020--Hb_001008_090 Hb_004449_200 Hb_004449_200 Hb_020419_020--Hb_004449_200 Hb_005663_120 Hb_005663_120 Hb_020419_020--Hb_005663_120 Hb_020419_020--Hb_068056_030 Hb_003540_030 Hb_003540_030 Hb_000140_050--Hb_003540_030 Hb_006831_120 Hb_006831_120 Hb_000140_050--Hb_006831_120 Hb_001545_100 Hb_001545_100 Hb_000140_050--Hb_001545_100 Hb_001776_160 Hb_001776_160 Hb_000140_050--Hb_001776_160 Hb_028872_080 Hb_028872_080 Hb_000140_050--Hb_028872_080 Hb_007904_260 Hb_007904_260 Hb_000140_050--Hb_007904_260 Hb_000224_140 Hb_000224_140 Hb_068056_030--Hb_000224_140 Hb_002918_290 Hb_002918_290 Hb_068056_030--Hb_002918_290 Hb_068056_030--Hb_006569_100 Hb_001512_080 Hb_001512_080 Hb_068056_030--Hb_001512_080 Hb_005463_140 Hb_005463_140 Hb_068056_030--Hb_005463_140 Hb_000417_260 Hb_000417_260 Hb_068056_030--Hb_000417_260 Hb_000300_220--Hb_001008_090 Hb_000322_140 Hb_000322_140 Hb_000300_220--Hb_000322_140 Hb_011537_110 Hb_011537_110 Hb_000300_220--Hb_011537_110 Hb_000300_220--Hb_068056_030 Hb_011457_090 Hb_011457_090 Hb_000300_220--Hb_011457_090 Hb_183961_010 Hb_183961_010 Hb_000300_220--Hb_183961_010 Hb_006569_100--Hb_001314_040 Hb_001519_030 Hb_001519_030 Hb_006569_100--Hb_001519_030 Hb_000069_550 Hb_000069_550 Hb_006569_100--Hb_000069_550 Hb_006569_100--Hb_001008_090 Hb_001157_010 Hb_001157_010 Hb_001314_040--Hb_001157_010 Hb_000802_100 Hb_000802_100 Hb_001314_040--Hb_000802_100 Hb_001314_040--Hb_000224_140 Hb_001314_040--Hb_068056_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.956716 0.0969178 1.42092 1.21076 0.44174 1.36793
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.06502 3.20409 3.30566 0.838661 0.788065

CAGE analysis