Hb_000264_270

Information

Type transcription factor
Description TF Family: HSF
Location Contig264: 240889-242657
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000264_270 0.0 transcription factor TF Family: HSF -
2 Hb_008953_010 0.1402537109 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X2 [Solanum lycopersicum]
3 Hb_002161_020 0.1482791139 transcription factor TF Family: bZIP hypothetical protein POPTR_0006s05770g, partial [Populus trichocarpa]
4 Hb_000375_040 0.1483483478 transcription factor TF Family: MYB-related PREDICTED: myb-related protein 308-like [Populus euphratica]
5 Hb_000828_030 0.1491617105 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
6 Hb_081224_010 0.1513410982 - - hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]
7 Hb_007437_010 0.1530255293 - - Polygalacturonase precursor, putative [Ricinus communis]
8 Hb_043903_010 0.1532493489 - - PREDICTED: protein kinase 2B, chloroplastic-like [Tarenaya hassleriana]
9 Hb_006415_020 0.1538818543 - - PREDICTED: nucleobase-ascorbate transporter 4-like [Jatropha curcas]
10 Hb_038238_010 0.1549644243 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
11 Hb_005726_030 0.1552194667 - - hypothetical protein CISIN_1g020511mg [Citrus sinensis]
12 Hb_061590_010 0.1554444703 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
13 Hb_106528_020 0.1569321117 - - Cationic peroxidase 2 precursor [Theobroma cacao]
14 Hb_000692_270 0.1571714492 - - PREDICTED: ornithine decarboxylase-like [Jatropha curcas]
15 Hb_000109_110 0.1575155536 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
16 Hb_187247_010 0.1582176717 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
17 Hb_011316_130 0.1585668355 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_000141_210 0.1586183395 - - PREDICTED: 36.4 kDa proline-rich protein-like [Camelina sativa]
19 Hb_001140_330 0.1588503515 - - PREDICTED: uncharacterized protein LOC105142675 [Populus euphratica]
20 Hb_003663_030 0.1594669564 - - PREDICTED: early nodulin-93-like [Jatropha curcas]

Gene co-expression network

sample Hb_000264_270 Hb_000264_270 Hb_008953_010 Hb_008953_010 Hb_000264_270--Hb_008953_010 Hb_002161_020 Hb_002161_020 Hb_000264_270--Hb_002161_020 Hb_000375_040 Hb_000375_040 Hb_000264_270--Hb_000375_040 Hb_000828_030 Hb_000828_030 Hb_000264_270--Hb_000828_030 Hb_081224_010 Hb_081224_010 Hb_000264_270--Hb_081224_010 Hb_007437_010 Hb_007437_010 Hb_000264_270--Hb_007437_010 Hb_008953_010--Hb_000375_040 Hb_043903_010 Hb_043903_010 Hb_008953_010--Hb_043903_010 Hb_008953_010--Hb_000828_030 Hb_008953_010--Hb_081224_010 Hb_005726_030 Hb_005726_030 Hb_008953_010--Hb_005726_030 Hb_061590_010 Hb_061590_010 Hb_008953_010--Hb_061590_010 Hb_012506_080 Hb_012506_080 Hb_002161_020--Hb_012506_080 Hb_022250_050 Hb_022250_050 Hb_002161_020--Hb_022250_050 Hb_001456_040 Hb_001456_040 Hb_002161_020--Hb_001456_040 Hb_000109_110 Hb_000109_110 Hb_002161_020--Hb_000109_110 Hb_000500_190 Hb_000500_190 Hb_002161_020--Hb_000500_190 Hb_004254_070 Hb_004254_070 Hb_002161_020--Hb_004254_070 Hb_000375_040--Hb_043903_010 Hb_000375_040--Hb_000828_030 Hb_000375_040--Hb_081224_010 Hb_187247_010 Hb_187247_010 Hb_000375_040--Hb_187247_010 Hb_000375_040--Hb_061590_010 Hb_020141_020 Hb_020141_020 Hb_000828_030--Hb_020141_020 Hb_010358_010 Hb_010358_010 Hb_000828_030--Hb_010358_010 Hb_106528_020 Hb_106528_020 Hb_000828_030--Hb_106528_020 Hb_153208_010 Hb_153208_010 Hb_000828_030--Hb_153208_010 Hb_005433_050 Hb_005433_050 Hb_000828_030--Hb_005433_050 Hb_038238_010 Hb_038238_010 Hb_000828_030--Hb_038238_010 Hb_081224_010--Hb_000828_030 Hb_081224_010--Hb_005433_050 Hb_081224_010--Hb_005726_030 Hb_081224_010--Hb_061590_010 Hb_081224_010--Hb_187247_010 Hb_081224_010--Hb_007437_010 Hb_006415_020 Hb_006415_020 Hb_007437_010--Hb_006415_020 Hb_007437_010--Hb_005726_030 Hb_007437_010--Hb_061590_010 Hb_007437_010--Hb_038238_010 Hb_007437_010--Hb_187247_010 Hb_007437_010--Hb_106528_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.26415 1.30255 0.0246423 0.029081 0.1239 0.982454
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.14204 0 0 93.5189 0

CAGE analysis