Hb_000109_110

Information

Type transcription factor
Description TF Family: LOB
Location Contig109: 199285-200785
Sequence    

Annotation

kegg
ID rcu:RCOM_0993260
description LOB domain-containing protein, putative
nr
ID XP_002521022.1
description LOB domain-containing protein, putative [Ricinus communis]
swissprot
ID Q9SLB7
description LOB domain-containing protein 16 OS=Arabidopsis thaliana GN=LBD16 PE=2 SV=1
trembl
ID B9S4L6
description LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_0993260 PE=4 SV=1
Gene Ontology
ID GO:0005634
description lob domain-containing protein 16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000109_110 0.0 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
2 Hb_000086_710 0.0722874562 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
3 Hb_009568_010 0.07462736 - - hypothetical protein POPTR_0001s46700g [Populus trichocarpa]
4 Hb_003334_080 0.0763738818 - - Reticuline oxidase precursor, putative [Ricinus communis]
5 Hb_109163_010 0.0767500022 - - polyphenol oxidase [Hevea brasiliensis]
6 Hb_001930_060 0.0796708613 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]
7 Hb_002553_170 0.0804880633 - - PREDICTED: early nodulin-75-like [Jatropha curcas]
8 Hb_000388_160 0.0807224756 - - xyloglucan endo-1 family protein [Populus trichocarpa]
9 Hb_058620_050 0.0823887805 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
10 Hb_000141_070 0.0829297601 - - l-lactate dehydrogenase, putative [Ricinus communis]
11 Hb_166232_010 0.083781805 - - hypothetical protein JCGZ_22831 [Jatropha curcas]
12 Hb_002835_020 0.0848625293 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
13 Hb_058620_040 0.084878951 - - Myrcene synthase, chloroplastic, putative isoform 1 [Theobroma cacao]
14 Hb_004057_050 0.0853382395 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
15 Hb_019392_010 0.0878849129 - - PREDICTED: LOW QUALITY PROTEIN: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Jatropha curcas]
16 Hb_001456_040 0.0882574949 - - NAD dependent epimerase/dehydratase, putative [Ricinus communis]
17 Hb_001266_110 0.0886393964 - - conserved hypothetical protein [Ricinus communis]
18 Hb_039363_010 0.0904037927 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
19 Hb_153208_010 0.0907233948 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
20 Hb_001301_020 0.0912588728 - - hypothetical protein JCGZ_06575 [Jatropha curcas]

Gene co-expression network

sample Hb_000109_110 Hb_000109_110 Hb_000086_710 Hb_000086_710 Hb_000109_110--Hb_000086_710 Hb_009568_010 Hb_009568_010 Hb_000109_110--Hb_009568_010 Hb_003334_080 Hb_003334_080 Hb_000109_110--Hb_003334_080 Hb_109163_010 Hb_109163_010 Hb_000109_110--Hb_109163_010 Hb_001930_060 Hb_001930_060 Hb_000109_110--Hb_001930_060 Hb_002553_170 Hb_002553_170 Hb_000109_110--Hb_002553_170 Hb_001266_110 Hb_001266_110 Hb_000086_710--Hb_001266_110 Hb_004057_050 Hb_004057_050 Hb_000086_710--Hb_004057_050 Hb_003334_020 Hb_003334_020 Hb_000086_710--Hb_003334_020 Hb_019392_010 Hb_019392_010 Hb_000086_710--Hb_019392_010 Hb_006925_010 Hb_006925_010 Hb_000086_710--Hb_006925_010 Hb_148986_010 Hb_148986_010 Hb_000086_710--Hb_148986_010 Hb_000141_070 Hb_000141_070 Hb_009568_010--Hb_000141_070 Hb_007483_040 Hb_007483_040 Hb_009568_010--Hb_007483_040 Hb_009568_010--Hb_003334_080 Hb_000446_100 Hb_000446_100 Hb_009568_010--Hb_000446_100 Hb_001456_040 Hb_001456_040 Hb_009568_010--Hb_001456_040 Hb_020480_050 Hb_020480_050 Hb_009568_010--Hb_020480_050 Hb_003334_080--Hb_000141_070 Hb_058620_040 Hb_058620_040 Hb_003334_080--Hb_058620_040 Hb_002835_020 Hb_002835_020 Hb_003334_080--Hb_002835_020 Hb_003334_080--Hb_002553_170 Hb_058620_050 Hb_058620_050 Hb_003334_080--Hb_058620_050 Hb_153208_010 Hb_153208_010 Hb_109163_010--Hb_153208_010 Hb_039363_010 Hb_039363_010 Hb_109163_010--Hb_039363_010 Hb_109163_010--Hb_000086_710 Hb_109163_010--Hb_002835_020 Hb_000563_060 Hb_000563_060 Hb_109163_010--Hb_000563_060 Hb_109163_010--Hb_004057_050 Hb_166232_010 Hb_166232_010 Hb_001930_060--Hb_166232_010 Hb_001930_060--Hb_002553_170 Hb_001930_060--Hb_002835_020 Hb_001930_060--Hb_003334_080 Hb_001301_020 Hb_001301_020 Hb_001930_060--Hb_001301_020 Hb_001930_060--Hb_009568_010 Hb_002553_170--Hb_002835_020 Hb_002553_170--Hb_000563_060 Hb_003188_020 Hb_003188_020 Hb_002553_170--Hb_003188_020 Hb_002553_170--Hb_000141_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0434517 0.0435703 0.0515949 0.104101 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.63092 0

CAGE analysis