Hb_000264_210

Information

Type -
Description -
Location Contig264: 165787-171473
Sequence    

Annotation

kegg
ID rcu:RCOM_0936010
description tfiih, polypeptide, putative
nr
ID XP_002519045.1
description tfiih, polypeptide, putative [Ricinus communis]
swissprot
ID Q54C29
description General transcription factor IIH subunit 4 OS=Dictyostelium discoideum GN=gtf2h4 PE=3 SV=1
trembl
ID B9RZ76
description Tfiih, polypeptide, putative OS=Ricinus communis GN=RCOM_0936010 PE=4 SV=1
Gene Ontology
ID GO:0000439
description general transcription factor iih subunit 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000264_210 0.0 - - tfiih, polypeptide, putative [Ricinus communis]
2 Hb_000260_550 0.0865956711 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
3 Hb_000286_070 0.097546368 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
4 Hb_000362_200 0.0981972483 - - exonuclease family protein [Populus trichocarpa]
5 Hb_000622_180 0.0989865322 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
6 Hb_001534_120 0.0992746345 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
7 Hb_003064_020 0.1001186162 - - hypothetical protein JCGZ_21649 [Jatropha curcas]
8 Hb_029388_020 0.1036612781 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002518_080 0.1042050061 - - PREDICTED: uncharacterized protein LOC105639837 [Jatropha curcas]
10 Hb_027472_040 0.1051441239 - - SKP1 [Hevea brasiliensis]
11 Hb_002685_040 0.106080739 - - hypothetical protein CICLE_v10017252mg [Citrus clementina]
12 Hb_003935_020 0.1069185866 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_000096_170 0.1082185142 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Jatropha curcas]
14 Hb_001459_080 0.1090835879 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
15 Hb_022425_040 0.1101063205 - - PREDICTED: probable RNA methyltransferase At5g51130 [Jatropha curcas]
16 Hb_005322_040 0.1105086254 - - 60S ribosomal protein L9, putative [Ricinus communis]
17 Hb_008554_060 0.1126553298 - - PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Jatropha curcas]
18 Hb_004787_060 0.1127432901 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
19 Hb_002026_220 0.1133635516 - - Glutamate--cysteine ligase, chloroplast precursor, putative [Ricinus communis]
20 Hb_001195_480 0.1137010503 - - cop9 complex subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_000264_210 Hb_000264_210 Hb_000260_550 Hb_000260_550 Hb_000264_210--Hb_000260_550 Hb_000286_070 Hb_000286_070 Hb_000264_210--Hb_000286_070 Hb_000362_200 Hb_000362_200 Hb_000264_210--Hb_000362_200 Hb_000622_180 Hb_000622_180 Hb_000264_210--Hb_000622_180 Hb_001534_120 Hb_001534_120 Hb_000264_210--Hb_001534_120 Hb_003064_020 Hb_003064_020 Hb_000264_210--Hb_003064_020 Hb_000096_170 Hb_000096_170 Hb_000260_550--Hb_000096_170 Hb_007044_130 Hb_007044_130 Hb_000260_550--Hb_007044_130 Hb_004453_170 Hb_004453_170 Hb_000260_550--Hb_004453_170 Hb_000127_180 Hb_000127_180 Hb_000260_550--Hb_000127_180 Hb_002518_080 Hb_002518_080 Hb_000260_550--Hb_002518_080 Hb_124953_020 Hb_124953_020 Hb_000260_550--Hb_124953_020 Hb_001329_290 Hb_001329_290 Hb_000286_070--Hb_001329_290 Hb_004787_060 Hb_004787_060 Hb_000286_070--Hb_004787_060 Hb_000009_530 Hb_000009_530 Hb_000286_070--Hb_000009_530 Hb_000286_070--Hb_001534_120 Hb_003292_040 Hb_003292_040 Hb_000286_070--Hb_003292_040 Hb_003935_020 Hb_003935_020 Hb_000286_070--Hb_003935_020 Hb_001512_060 Hb_001512_060 Hb_000362_200--Hb_001512_060 Hb_000362_200--Hb_001534_120 Hb_009421_020 Hb_009421_020 Hb_000362_200--Hb_009421_020 Hb_005186_050 Hb_005186_050 Hb_000362_200--Hb_005186_050 Hb_004093_090 Hb_004093_090 Hb_000362_200--Hb_004093_090 Hb_007477_070 Hb_007477_070 Hb_000362_200--Hb_007477_070 Hb_000193_110 Hb_000193_110 Hb_000622_180--Hb_000193_110 Hb_029388_020 Hb_029388_020 Hb_000622_180--Hb_029388_020 Hb_001195_480 Hb_001195_480 Hb_000622_180--Hb_001195_480 Hb_000236_390 Hb_000236_390 Hb_000622_180--Hb_000236_390 Hb_021068_040 Hb_021068_040 Hb_000622_180--Hb_021068_040 Hb_002685_040 Hb_002685_040 Hb_000622_180--Hb_002685_040 Hb_001534_120--Hb_001195_480 Hb_001534_120--Hb_007477_070 Hb_010921_010 Hb_010921_010 Hb_001534_120--Hb_010921_010 Hb_002534_150 Hb_002534_150 Hb_001534_120--Hb_002534_150 Hb_001534_120--Hb_001512_060 Hb_008554_060 Hb_008554_060 Hb_003064_020--Hb_008554_060 Hb_011512_070 Hb_011512_070 Hb_003064_020--Hb_011512_070 Hb_002226_060 Hb_002226_060 Hb_003064_020--Hb_002226_060 Hb_003052_190 Hb_003052_190 Hb_003064_020--Hb_003052_190 Hb_000589_120 Hb_000589_120 Hb_003064_020--Hb_000589_120 Hb_003942_020 Hb_003942_020 Hb_003064_020--Hb_003942_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.27467 0.486863 0.970466 0.590299 0.784497 0.499165
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.687239 1.87798 0.638153 0.716892 0.295936

CAGE analysis