Hb_000156_170

Information

Type -
Description -
Location Contig156: 129000-131887
Sequence    

Annotation

kegg
ID pmum:103325010
description pentatricopeptide repeat-containing protein At3g14730
nr
ID XP_008225349.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g14730 [Prunus mume]
swissprot
ID Q9LUC2
description Pentatricopeptide repeat-containing protein At3g14730 OS=Arabidopsis thaliana GN=PCMP-E31 PE=2 SV=1
trembl
ID M5WJN6
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002835mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000156_170 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14730 [Prunus mume]
2 Hb_004241_220 0.2652201452 - - -
3 Hb_094730_010 0.2686869613 - - hypothetical protein JCGZ_04374 [Jatropha curcas]
4 Hb_002391_100 0.2827883738 - - hypothetical protein POPTR_0007s09360g [Populus trichocarpa]
5 Hb_005348_130 0.2882375889 - - PREDICTED: pollen receptor-like kinase 3 [Jatropha curcas]
6 Hb_000680_040 0.2942967926 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
7 Hb_148146_030 0.3010799472 - - PREDICTED: uncharacterized protein LOC105649266 [Jatropha curcas]
8 Hb_003605_140 0.3043737268 - - conserved hypothetical protein [Ricinus communis]
9 Hb_109358_010 0.3089825761 - - -
10 Hb_000375_270 0.3147520875 - - -
11 Hb_000010_450 0.3174949654 - - purine permease, putative [Ricinus communis]
12 Hb_003549_060 0.3324388033 - - PREDICTED: importin subunit alpha-1a-like isoform X3 [Gossypium raimondii]
13 Hb_001433_060 0.3374467843 - - hypothetical protein JCGZ_23291 [Jatropha curcas]
14 Hb_000431_090 0.3380543676 - - hypothetical protein POPTR_0017s14020g [Populus trichocarpa]
15 Hb_001184_120 0.3390840039 - - hypothetical protein CICLE_v10025281mg [Citrus clementina]
16 Hb_001638_100 0.3452706112 - - PREDICTED: probable protein S-acyltransferase 12 [Vitis vinifera]
17 Hb_003762_010 0.3495593984 - - -
18 Hb_003638_060 0.3545300975 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-like [Jatropha curcas]
19 Hb_000896_130 0.3555079702 transcription factor TF Family: CPP cysteine-rich polycomb-like family protein [Populus trichocarpa]
20 Hb_004324_230 0.356003206 transcription factor TF Family: bHLH PREDICTED: transcription factor SPEECHLESS [Jatropha curcas]

Gene co-expression network

sample Hb_000156_170 Hb_000156_170 Hb_004241_220 Hb_004241_220 Hb_000156_170--Hb_004241_220 Hb_094730_010 Hb_094730_010 Hb_000156_170--Hb_094730_010 Hb_002391_100 Hb_002391_100 Hb_000156_170--Hb_002391_100 Hb_005348_130 Hb_005348_130 Hb_000156_170--Hb_005348_130 Hb_000680_040 Hb_000680_040 Hb_000156_170--Hb_000680_040 Hb_148146_030 Hb_148146_030 Hb_000156_170--Hb_148146_030 Hb_004241_220--Hb_094730_010 Hb_004241_220--Hb_000680_040 Hb_000375_270 Hb_000375_270 Hb_004241_220--Hb_000375_270 Hb_109358_010 Hb_109358_010 Hb_004241_220--Hb_109358_010 Hb_003549_060 Hb_003549_060 Hb_004241_220--Hb_003549_060 Hb_001433_060 Hb_001433_060 Hb_004241_220--Hb_001433_060 Hb_094730_010--Hb_000375_270 Hb_094730_010--Hb_003549_060 Hb_094730_010--Hb_000680_040 Hb_094730_010--Hb_109358_010 Hb_094730_010--Hb_148146_030 Hb_000856_160 Hb_000856_160 Hb_002391_100--Hb_000856_160 Hb_003659_020 Hb_003659_020 Hb_002391_100--Hb_003659_020 Hb_008035_050 Hb_008035_050 Hb_002391_100--Hb_008035_050 Hb_139691_010 Hb_139691_010 Hb_002391_100--Hb_139691_010 Hb_001342_050 Hb_001342_050 Hb_002391_100--Hb_001342_050 Hb_005348_130--Hb_148146_030 Hb_003762_010 Hb_003762_010 Hb_005348_130--Hb_003762_010 Hb_009554_020 Hb_009554_020 Hb_005348_130--Hb_009554_020 Hb_007970_030 Hb_007970_030 Hb_005348_130--Hb_007970_030 Hb_182291_020 Hb_182291_020 Hb_005348_130--Hb_182291_020 Hb_000116_340 Hb_000116_340 Hb_005348_130--Hb_000116_340 Hb_000680_040--Hb_001433_060 Hb_001184_120 Hb_001184_120 Hb_000680_040--Hb_001184_120 Hb_000680_040--Hb_109358_010 Hb_000200_260 Hb_000200_260 Hb_000680_040--Hb_000200_260 Hb_005015_040 Hb_005015_040 Hb_148146_030--Hb_005015_040 Hb_148146_030--Hb_009554_020 Hb_136620_010 Hb_136620_010 Hb_148146_030--Hb_136620_010 Hb_148146_030--Hb_007970_030 Hb_000069_250 Hb_000069_250 Hb_148146_030--Hb_000069_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0498917 1.17354 0 0.212602 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.163702 0 0

CAGE analysis