Hb_002391_100

Information

Type -
Description -
Location Contig2391: 66183-66515
Sequence    

Annotation

kegg
ID pop:POPTR_0007s09360g
description hypothetical protein
nr
ID XP_006380568.1
description hypothetical protein POPTR_0007s09360g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5G4M6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s09360g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002391_100 0.0 - - hypothetical protein POPTR_0007s09360g [Populus trichocarpa]
2 Hb_000856_160 0.2700096403 - - -
3 Hb_000156_170 0.2827883738 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14730 [Prunus mume]
4 Hb_003659_020 0.3418918921 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
5 Hb_008035_050 0.3450786409 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
6 Hb_139691_010 0.3513597043 - - -
7 Hb_001342_050 0.3567309807 - - -
8 Hb_002999_040 0.366580475 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001818_030 0.3726499061 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
10 Hb_000010_450 0.3729751293 - - purine permease, putative [Ricinus communis]
11 Hb_000392_290 0.3845980666 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
12 Hb_171065_010 0.4037322537 - - Ribonuclease H protein [Theobroma cacao]
13 Hb_010515_030 0.4061489552 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
14 Hb_001221_280 0.4064645431 - - -
15 Hb_001789_170 0.4155826978 - - hypothetical protein JCGZ_08269 [Jatropha curcas]
16 Hb_000567_400 0.4159486427 - - cytochrome P450 family protein [Populus trichocarpa]
17 Hb_001008_140 0.419665931 - - -
18 Hb_006569_070 0.4208849266 - - nucleic acid binding protein, putative [Ricinus communis]
19 Hb_003020_060 0.4209289549 - - PREDICTED: low-temperature-induced 65 kDa protein [Jatropha curcas]
20 Hb_002382_020 0.4223005755 - - PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 [Jatropha curcas]

Gene co-expression network

sample Hb_002391_100 Hb_002391_100 Hb_000856_160 Hb_000856_160 Hb_002391_100--Hb_000856_160 Hb_000156_170 Hb_000156_170 Hb_002391_100--Hb_000156_170 Hb_003659_020 Hb_003659_020 Hb_002391_100--Hb_003659_020 Hb_008035_050 Hb_008035_050 Hb_002391_100--Hb_008035_050 Hb_139691_010 Hb_139691_010 Hb_002391_100--Hb_139691_010 Hb_001342_050 Hb_001342_050 Hb_002391_100--Hb_001342_050 Hb_000856_160--Hb_003659_020 Hb_000856_160--Hb_008035_050 Hb_000856_160--Hb_139691_010 Hb_000392_290 Hb_000392_290 Hb_000856_160--Hb_000392_290 Hb_001789_170 Hb_001789_170 Hb_000856_160--Hb_001789_170 Hb_002999_040 Hb_002999_040 Hb_000856_160--Hb_002999_040 Hb_004241_220 Hb_004241_220 Hb_000156_170--Hb_004241_220 Hb_094730_010 Hb_094730_010 Hb_000156_170--Hb_094730_010 Hb_005348_130 Hb_005348_130 Hb_000156_170--Hb_005348_130 Hb_000680_040 Hb_000680_040 Hb_000156_170--Hb_000680_040 Hb_148146_030 Hb_148146_030 Hb_000156_170--Hb_148146_030 Hb_003659_020--Hb_008035_050 Hb_003659_020--Hb_139691_010 Hb_003659_020--Hb_000392_290 Hb_003659_020--Hb_001789_170 Hb_002498_130 Hb_002498_130 Hb_003659_020--Hb_002498_130 Hb_000781_050 Hb_000781_050 Hb_003659_020--Hb_000781_050 Hb_008035_050--Hb_139691_010 Hb_008035_050--Hb_000392_290 Hb_008035_050--Hb_001789_170 Hb_008035_050--Hb_002498_130 Hb_008035_050--Hb_000781_050 Hb_139691_010--Hb_000392_290 Hb_139691_010--Hb_001789_170 Hb_139691_010--Hb_002498_130 Hb_139691_010--Hb_000781_050 Hb_171065_010 Hb_171065_010 Hb_001342_050--Hb_171065_010 Hb_001143_260 Hb_001143_260 Hb_001342_050--Hb_001143_260 Hb_001342_050--Hb_001789_170 Hb_001342_050--Hb_002498_130 Hb_001342_050--Hb_000781_050 Hb_011356_020 Hb_011356_020 Hb_001342_050--Hb_011356_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.513502 0 0.124517 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.343014 0 0

CAGE analysis