Hb_178592_010

Information

Type -
Description -
Location Contig178592: 11989-16089
Sequence    

Annotation

kegg
ID rcu:RCOM_1004030
description Aspartic proteinase oryzasin-1 precursor, putative (EC:3.4.23.40)
nr
ID XP_012084224.1
description PREDICTED: cyprosin-like [Jatropha curcas]
swissprot
ID Q8VYL3
description Aspartic proteinase A2 OS=Arabidopsis thaliana GN=APA2 PE=2 SV=1
trembl
ID A0A067JVM1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19101 PE=3 SV=1
Gene Ontology
ID GO:0004190
description aspartic proteinase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17162: 12793-13005 , PASA_asmbl_17163: 13357-14472 , PASA_asmbl_17164: 14664-15161 , PASA_asmbl_17165: 15635-15845
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_178592_010 0.0 - - PREDICTED: cyprosin-like [Jatropha curcas]
2 Hb_000003_790 0.091432414 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
3 Hb_001975_020 0.0975334585 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
4 Hb_000046_450 0.0985244099 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
5 Hb_001019_170 0.099909663 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]
6 Hb_025477_060 0.1016318377 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
7 Hb_032202_240 0.1023642287 - - PREDICTED: F-box protein At4g00755 [Jatropha curcas]
8 Hb_002235_320 0.1071435351 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
9 Hb_042083_070 0.1083502455 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
10 Hb_000165_130 0.1085104008 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
11 Hb_000849_100 0.110992403 - - PREDICTED: uncharacterized protein LOC105644134 [Jatropha curcas]
12 Hb_000002_440 0.1121263698 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
13 Hb_031754_010 0.1126557688 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
14 Hb_000116_280 0.113736665 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
15 Hb_002716_140 0.1139852084 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
16 Hb_004128_080 0.1152177159 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
17 Hb_001226_180 0.115410922 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
18 Hb_002986_050 0.1154547165 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
19 Hb_003018_160 0.1156217554 - - PREDICTED: uncharacterized protein LOC105628876 [Jatropha curcas]
20 Hb_002725_070 0.1158209875 - - hypothetical protein PRUPE_ppa005949mg [Prunus persica]

Gene co-expression network

sample Hb_178592_010 Hb_178592_010 Hb_000003_790 Hb_000003_790 Hb_178592_010--Hb_000003_790 Hb_001975_020 Hb_001975_020 Hb_178592_010--Hb_001975_020 Hb_000046_450 Hb_000046_450 Hb_178592_010--Hb_000046_450 Hb_001019_170 Hb_001019_170 Hb_178592_010--Hb_001019_170 Hb_025477_060 Hb_025477_060 Hb_178592_010--Hb_025477_060 Hb_032202_240 Hb_032202_240 Hb_178592_010--Hb_032202_240 Hb_000134_360 Hb_000134_360 Hb_000003_790--Hb_000134_360 Hb_000317_440 Hb_000317_440 Hb_000003_790--Hb_000317_440 Hb_000003_790--Hb_001975_020 Hb_008528_010 Hb_008528_010 Hb_000003_790--Hb_008528_010 Hb_002235_320 Hb_002235_320 Hb_000003_790--Hb_002235_320 Hb_002725_070 Hb_002725_070 Hb_000003_790--Hb_002725_070 Hb_000327_310 Hb_000327_310 Hb_001975_020--Hb_000327_310 Hb_046615_020 Hb_046615_020 Hb_001975_020--Hb_046615_020 Hb_031754_010 Hb_031754_010 Hb_001975_020--Hb_031754_010 Hb_005295_040 Hb_005295_040 Hb_001975_020--Hb_005295_040 Hb_000116_280 Hb_000116_280 Hb_001975_020--Hb_000116_280 Hb_003018_160 Hb_003018_160 Hb_001975_020--Hb_003018_160 Hb_000699_250 Hb_000699_250 Hb_000046_450--Hb_000699_250 Hb_008714_020 Hb_008714_020 Hb_000046_450--Hb_008714_020 Hb_006816_300 Hb_006816_300 Hb_000046_450--Hb_006816_300 Hb_000046_450--Hb_025477_060 Hb_000046_450--Hb_001019_170 Hb_007849_020 Hb_007849_020 Hb_000046_450--Hb_007849_020 Hb_001019_170--Hb_008714_020 Hb_008695_120 Hb_008695_120 Hb_001019_170--Hb_008695_120 Hb_003581_120 Hb_003581_120 Hb_001019_170--Hb_003581_120 Hb_002400_180 Hb_002400_180 Hb_001019_170--Hb_002400_180 Hb_000076_080 Hb_000076_080 Hb_001019_170--Hb_000076_080 Hb_006913_040 Hb_006913_040 Hb_001019_170--Hb_006913_040 Hb_000002_440 Hb_000002_440 Hb_025477_060--Hb_000002_440 Hb_147737_010 Hb_147737_010 Hb_025477_060--Hb_147737_010 Hb_000096_180 Hb_000096_180 Hb_025477_060--Hb_000096_180 Hb_025477_060--Hb_046615_020 Hb_025477_060--Hb_001975_020 Hb_002977_010 Hb_002977_010 Hb_032202_240--Hb_002977_010 Hb_001946_300 Hb_001946_300 Hb_032202_240--Hb_001946_300 Hb_001616_050 Hb_001616_050 Hb_032202_240--Hb_001616_050 Hb_000331_160 Hb_000331_160 Hb_032202_240--Hb_000331_160 Hb_017075_030 Hb_017075_030 Hb_032202_240--Hb_017075_030 Hb_032202_240--Hb_025477_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.05584 2.78369 0.816273 1.37882 4.82102 5.21094
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.26779 0.581162 2.07096 0.924782 0.744531

CAGE analysis