Hb_172154_010

Information

Type -
Description -
Location Contig172154: 89-867
Sequence    

Annotation

kegg
ID pop:POPTR_0002s07340g
description POPTRDRAFT_798647; pentatricopeptide repeat-containing family protein
nr
ID KDP43061.1
description hypothetical protein JCGZ_25247 [Jatropha curcas]
swissprot
ID Q9LVF9
description Pentatricopeptide repeat-containing protein At3g21470 OS=Arabidopsis thaliana GN=PCMP-E29 PE=2 SV=1
trembl
ID A0A067L3L8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25247 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16222: 326-507
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_172154_010 0.0 - - hypothetical protein JCGZ_25247 [Jatropha curcas]
2 Hb_002791_010 0.2405308518 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X2 [Jatropha curcas]
3 Hb_002609_220 0.2452986781 - - Leucine-rich repeat protein kinase family protein, putative [Theobroma cacao]
4 Hb_009491_040 0.249522241 - - PREDICTED: uncharacterized protein LOC105636967 [Jatropha curcas]
5 Hb_007926_040 0.2521155974 - - sulfate transporter, putative [Ricinus communis]
6 Hb_002025_200 0.2557133397 - - -
7 Hb_000772_040 0.2578756648 - - PREDICTED: uncharacterized protein LOC105036273 [Elaeis guineensis]
8 Hb_001009_310 0.259438978 - - PREDICTED: radical S-adenosyl methionine domain-containing protein 1, mitochondrial [Jatropha curcas]
9 Hb_002686_290 0.2595220583 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Populus euphratica]
10 Hb_003786_020 0.2626288185 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
11 Hb_000479_130 0.2649191728 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39350 [Jatropha curcas]
12 Hb_001006_230 0.2659716069 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
13 Hb_006371_010 0.2713885646 - - hypothetical protein JCGZ_21227 [Jatropha curcas]
14 Hb_000062_150 0.2715157346 - - PREDICTED: probable carboxylesterase 16 [Jatropha curcas]
15 Hb_007632_220 0.2724530063 - - RNA-binding protein, putative [Ricinus communis]
16 Hb_002783_260 0.273082075 - - hypothetical protein JCGZ_08219 [Jatropha curcas]
17 Hb_006111_070 0.2742106228 - - hypothetical protein POPTR_0008s07660g [Populus trichocarpa]
18 Hb_007416_270 0.2751037611 - - PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]
19 Hb_004048_090 0.2755831955 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 [Jatropha curcas]
20 Hb_000088_010 0.2757201254 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_172154_010 Hb_172154_010 Hb_002791_010 Hb_002791_010 Hb_172154_010--Hb_002791_010 Hb_002609_220 Hb_002609_220 Hb_172154_010--Hb_002609_220 Hb_009491_040 Hb_009491_040 Hb_172154_010--Hb_009491_040 Hb_007926_040 Hb_007926_040 Hb_172154_010--Hb_007926_040 Hb_002025_200 Hb_002025_200 Hb_172154_010--Hb_002025_200 Hb_000772_040 Hb_000772_040 Hb_172154_010--Hb_000772_040 Hb_000836_530 Hb_000836_530 Hb_002791_010--Hb_000836_530 Hb_002783_260 Hb_002783_260 Hb_002791_010--Hb_002783_260 Hb_001009_310 Hb_001009_310 Hb_002791_010--Hb_001009_310 Hb_002496_050 Hb_002496_050 Hb_002791_010--Hb_002496_050 Hb_001007_060 Hb_001007_060 Hb_002791_010--Hb_001007_060 Hb_005396_130 Hb_005396_130 Hb_002791_010--Hb_005396_130 Hb_005532_060 Hb_005532_060 Hb_002609_220--Hb_005532_060 Hb_004324_370 Hb_004324_370 Hb_002609_220--Hb_004324_370 Hb_000223_150 Hb_000223_150 Hb_002609_220--Hb_000223_150 Hb_006501_040 Hb_006501_040 Hb_002609_220--Hb_006501_040 Hb_002609_220--Hb_001009_310 Hb_178968_110 Hb_178968_110 Hb_002609_220--Hb_178968_110 Hb_000934_270 Hb_000934_270 Hb_009491_040--Hb_000934_270 Hb_000576_040 Hb_000576_040 Hb_009491_040--Hb_000576_040 Hb_000479_130 Hb_000479_130 Hb_009491_040--Hb_000479_130 Hb_006922_030 Hb_006922_030 Hb_009491_040--Hb_006922_030 Hb_000173_230 Hb_000173_230 Hb_009491_040--Hb_000173_230 Hb_000297_200 Hb_000297_200 Hb_009491_040--Hb_000297_200 Hb_022288_020 Hb_022288_020 Hb_007926_040--Hb_022288_020 Hb_000016_110 Hb_000016_110 Hb_007926_040--Hb_000016_110 Hb_004048_090 Hb_004048_090 Hb_007926_040--Hb_004048_090 Hb_041091_010 Hb_041091_010 Hb_007926_040--Hb_041091_010 Hb_012395_190 Hb_012395_190 Hb_007926_040--Hb_012395_190 Hb_010436_020 Hb_010436_020 Hb_007926_040--Hb_010436_020 Hb_002681_070 Hb_002681_070 Hb_002025_200--Hb_002681_070 Hb_002025_200--Hb_002783_260 Hb_002193_010 Hb_002193_010 Hb_002025_200--Hb_002193_010 Hb_000574_390 Hb_000574_390 Hb_002025_200--Hb_000574_390 Hb_012799_180 Hb_012799_180 Hb_002025_200--Hb_012799_180 Hb_001019_190 Hb_001019_190 Hb_002025_200--Hb_001019_190 Hb_000399_010 Hb_000399_010 Hb_000772_040--Hb_000399_010 Hb_000012_460 Hb_000012_460 Hb_000772_040--Hb_000012_460 Hb_001703_120 Hb_001703_120 Hb_000772_040--Hb_001703_120 Hb_000865_060 Hb_000865_060 Hb_000772_040--Hb_000865_060 Hb_001294_010 Hb_001294_010 Hb_000772_040--Hb_001294_010 Hb_000160_320 Hb_000160_320 Hb_000772_040--Hb_000160_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.455796 0.264001 0 0 0.478535 0.53414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.164094 0.322496 0.91965 0 0.50962

CAGE analysis