Hb_002791_010

Information

Type -
Description -
Location Contig2791: 936-13395
Sequence    

Annotation

kegg
ID pop:POPTR_0013s13300g
description hypothetical protein
nr
ID XP_012078857.1
description PREDICTED: general transcription factor 3C polypeptide 3-like isoform X2 [Jatropha curcas]
swissprot
ID Q9Y5Q9
description General transcription factor 3C polypeptide 3 OS=Homo sapiens GN=GTF3C3 PE=1 SV=1
trembl
ID A0A067K8M4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13387 PE=4 SV=1
Gene Ontology
ID GO:0000278
description general transcription factor 3c polypeptide 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29128: 9197-13369
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002791_010 0.0 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X2 [Jatropha curcas]
2 Hb_000836_530 0.0961453292 - - PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
3 Hb_002783_260 0.1258505909 - - hypothetical protein JCGZ_08219 [Jatropha curcas]
4 Hb_001009_310 0.1317255993 - - PREDICTED: radical S-adenosyl methionine domain-containing protein 1, mitochondrial [Jatropha curcas]
5 Hb_002496_050 0.1331373784 - - PREDICTED: uncharacterized protein LOC105630509 [Jatropha curcas]
6 Hb_001007_060 0.1358416295 - - Transcriptional corepressor SEUSS [Glycine soja]
7 Hb_005396_130 0.1367301471 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
8 Hb_001002_030 0.13713516 - - PREDICTED: uncharacterized protein LOC105643537 [Jatropha curcas]
9 Hb_000574_390 0.1426725587 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Jatropha curcas]
10 Hb_002025_200 0.1428573504 - - -
11 Hb_001975_160 0.1428993699 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_015198_020 0.1439372202 - - conserved hypothetical protein [Ricinus communis]
13 Hb_013405_030 0.1446672447 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000776_110 0.1461300664 - - PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]
15 Hb_001789_210 0.1462006687 - - PREDICTED: methyltransferase-like protein 1 isoform X2 [Jatropha curcas]
16 Hb_001245_070 0.146624891 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
17 Hb_005375_030 0.1474824842 - - DEAD/DEAH box helicase factory [Malus domestica]
18 Hb_000413_180 0.1479791386 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
19 Hb_003057_110 0.1488933509 - - PREDICTED: uncharacterized protein LOC105639179 [Jatropha curcas]
20 Hb_007632_220 0.1489609945 - - RNA-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002791_010 Hb_002791_010 Hb_000836_530 Hb_000836_530 Hb_002791_010--Hb_000836_530 Hb_002783_260 Hb_002783_260 Hb_002791_010--Hb_002783_260 Hb_001009_310 Hb_001009_310 Hb_002791_010--Hb_001009_310 Hb_002496_050 Hb_002496_050 Hb_002791_010--Hb_002496_050 Hb_001007_060 Hb_001007_060 Hb_002791_010--Hb_001007_060 Hb_005396_130 Hb_005396_130 Hb_002791_010--Hb_005396_130 Hb_001258_030 Hb_001258_030 Hb_000836_530--Hb_001258_030 Hb_000865_060 Hb_000865_060 Hb_000836_530--Hb_000865_060 Hb_001500_040 Hb_001500_040 Hb_000836_530--Hb_001500_040 Hb_000574_390 Hb_000574_390 Hb_000836_530--Hb_000574_390 Hb_007632_220 Hb_007632_220 Hb_000836_530--Hb_007632_220 Hb_011673_030 Hb_011673_030 Hb_002783_260--Hb_011673_030 Hb_001507_020 Hb_001507_020 Hb_002783_260--Hb_001507_020 Hb_000538_200 Hb_000538_200 Hb_002783_260--Hb_000538_200 Hb_003938_080 Hb_003938_080 Hb_002783_260--Hb_003938_080 Hb_001245_070 Hb_001245_070 Hb_002783_260--Hb_001245_070 Hb_001736_040 Hb_001736_040 Hb_002783_260--Hb_001736_040 Hb_000022_250 Hb_000022_250 Hb_001009_310--Hb_000022_250 Hb_001009_310--Hb_002783_260 Hb_085781_010 Hb_085781_010 Hb_001009_310--Hb_085781_010 Hb_007951_050 Hb_007951_050 Hb_001009_310--Hb_007951_050 Hb_000776_110 Hb_000776_110 Hb_001009_310--Hb_000776_110 Hb_010172_050 Hb_010172_050 Hb_001009_310--Hb_010172_050 Hb_006915_050 Hb_006915_050 Hb_002496_050--Hb_006915_050 Hb_007672_050 Hb_007672_050 Hb_002496_050--Hb_007672_050 Hb_000236_070 Hb_000236_070 Hb_002496_050--Hb_000236_070 Hb_002253_070 Hb_002253_070 Hb_002496_050--Hb_002253_070 Hb_001017_040 Hb_001017_040 Hb_002496_050--Hb_001017_040 Hb_164926_030 Hb_164926_030 Hb_002496_050--Hb_164926_030 Hb_003142_020 Hb_003142_020 Hb_001007_060--Hb_003142_020 Hb_003057_110 Hb_003057_110 Hb_001007_060--Hb_003057_110 Hb_004143_130 Hb_004143_130 Hb_001007_060--Hb_004143_130 Hb_001007_060--Hb_000574_390 Hb_003106_060 Hb_003106_060 Hb_001007_060--Hb_003106_060 Hb_001007_060--Hb_006915_050 Hb_000184_110 Hb_000184_110 Hb_005396_130--Hb_000184_110 Hb_001322_190 Hb_001322_190 Hb_005396_130--Hb_001322_190 Hb_005396_130--Hb_001017_040 Hb_004452_100 Hb_004452_100 Hb_005396_130--Hb_004452_100 Hb_002798_040 Hb_002798_040 Hb_005396_130--Hb_002798_040 Hb_000100_070 Hb_000100_070 Hb_005396_130--Hb_000100_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.6323 6.49803 1.64343 0.550024 10.1546 11.2516
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6055 5.78291 15.8025 4.40708 10.1256

CAGE analysis